Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 13

Results: 69

IBD-Groupon: an efficient method for detecting group-wise identity-by-descent regions simultaneously in multiple individuals based on pairwise IBD relationships.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i162

By:

He, Dan

Publication type:

Article

CellAging: a tool to study segregation and partitioning in division in cell lineages of Escherichia coli.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1708, doi. 10.1093/bioinformatics/btt194

By:

Häkkinen, Antti;
Muthukrishnan, Anantha-Barathi;
Mora, Andre;
Fonseca, Jose M.;
Ribeiro, Andre S.

Publication type:

Article

NETAL: a new graph-based method for global alignment of protein–protein interaction networks.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1654, doi. 10.1093/bioinformatics/btt202

By:

Neyshabur, Behnam;
Khadem, Ahmadreza;
Hashemifar, Somaye;
Arab, Seyed Shahriar

Publication type:

Article

Author Index.

Published in:: Bioinformatics, 2013, v. 29, n. 13, p. i371, doi. 10.1093/bioinformatics/btt346
Publication type:: Article

A context-sensitive framework for the analysis of human signalling pathways in molecular interaction networks.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i210, doi. 10.1093/bioinformatics/btt240

By:

Lan, Alexander;
Ziv-Ukelson, Michal;
Yeger-Lotem, Esti

Publication type:

Article

Predicting protein interactions via parsimonious network history inference.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i237, doi. 10.1093/bioinformatics/btt224

By:

Patro, Rob;
Kingsford, Carl

Publication type:

Article

Poly(A) motif prediction using spectral latent features from human DNA sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i316, doi. 10.1093/bioinformatics/btt218

By:

Xie, Bo;
Jankovic, Boris R.;
Bajic, Vladimir B.;
Song, Le;
Gao, Xin

Publication type:

Article

A graph kernel approach for alignment-free domain–peptide interaction prediction with an application to human SH3 domains.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i335, doi. 10.1093/bioinformatics/btt220

By:

Kundu, Kousik;
Costa, Fabrizio;
Backofen, Rolf

Publication type:

Article

Twine: display and analysis of cis-regulatory modules.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1690, doi. 10.1093/bioinformatics/btt264

By:

Pearson, Joseph C.;
Crews, Stephen T.

Publication type:

Article

Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i108, doi. 10.1093/bioinformatics/btt233

By:

Hafez, Dina;
Ni, Ting;
Mukherjee, Sayan;
Zhu, Jun;
Ohler, Uwe

Publication type:

Article

A framework for scalable parameter estimation of gene circuit models using structural information.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i98, doi. 10.1093/bioinformatics/btt232

By:

Kuwahara, Hiroyuki;
Fan, Ming;
Wang, Suojin;
Gao, Xin

Publication type:

Article

Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1614, doi. 10.1093/bioinformatics/btt196

By:

Chen, Xiang;
Qiu, Jian-Ding;
Shi, Shao-Ping;
Suo, Sheng-Bao;
Huang, Shu-Yun;
Liang, Ru-Ping

Publication type:

Article

Compressive genomics for protein databases.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i283, doi. 10.1093/bioinformatics/btt214

By:

Daniels, Noah M.;
Gallant, Andrew;
Peng, Jian;
Cowen, Lenore J.;
Baym, Michael;
Berger, Bonnie

Publication type:

Article

Janus—a comprehensive tool investigating the two faces of transcription.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1600, doi. 10.1093/bioinformatics/btt185

By:

Barann, Matthias;
Esser, Daniela;
Klostermeier, Ulrich C;
Lappalainen, Tuuli;
Luzius, Anne;
Kuiper, Jan W. P.;
Ammerpohl, Ole;
Vater, Inga;
Siebert, Reiner;
Amstislavskiy, Vyacheslav;
Sudbrak, Ralf;
Lehrach, Hans;
Schreiber, Stefan;
Rosenstiel, Philip

Publication type:

Article

iFUSE: integrated fusion gene explorer.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1700, doi. 10.1093/bioinformatics/btt252

By:

Hiltemann, Saskia;
McClellan, Elizabeth A.;
van Nijnatten, Jos;
Horsman, Sebastiaan;
Palli, Ivo;
Teles Alves, Ines;
Hartjes, Thomas;
Trapman, Jan;
van der Spek, Peter;
Jenster, Guido;
Stubbs, Andrew

Publication type:

Article

Simple topological properties predict functional misannotations in a metabolic network.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i154, doi. 10.1093/bioinformatics/btt236

By:

Liberal, Rodrigo;
Pinney, John W.

Publication type:

Article

Detection of significantly differentially methylated regions in targeted bisulfite sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1647, doi. 10.1093/bioinformatics/btt263

By:

Hebestreit, Katja;
Dugas, Martin;
Klein, Hans-Ulrich

Publication type:

Article

FuncISH: learning a functional representation of neural ISH images.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i36, doi. 10.1093/bioinformatics/btt207

By:

Liscovitch, Noa;
Shalit, Uri;
Chechik, Gal

Publication type:

Article

Predicting drug-target interactions using restricted Boltzmann machines.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i126, doi. 10.1093/bioinformatics/btt234

By:

Wang, Yuhao;
Zeng, Jianyang

Publication type:

Article

NetworkTrail—a web service for identifying and visualizing deregulated subnetworks.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1702, doi. 10.1093/bioinformatics/btt204

By:

Stöckel, Daniel;
Müller, Oliver;
Kehl, Tim;
Gerasch, Andreas;
Backes, Christina;
Rurainski, Alexander;
Keller, Andreas;
Kaufmann, Michael;
Lenhof, Hans-Peter

Publication type:

Article

miMsg: a target enrichment algorithm for predicted miR–mRNA interactions based on relative ranking of matched expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1638, doi. 10.1093/bioinformatics/btt246

By:

Rijlaarsdam, Martin A.;
Rijlaarsdam, David J.;
Gillis, Ad J. M.;
Dorssers, Lambert C. J.;
Looijenga, Leendert H. J.

Publication type:

Article

Automated annotation and quantification of glycans using liquid chromatography–mass spectrometry.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1706, doi. 10.1093/bioinformatics/btt190

By:

Yu, Chuan-Yih;
Mayampurath, Anoop;
Hu, Yunli;
Zhou, Shiyue;
Mechref, Yehia;
Tang, Haixu

Publication type:

Article

IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i326, doi. 10.1093/bioinformatics/btt219

By:

Peng, Yu;
Leung, Henry C. M.;
Yiu, Siu-Ming;
Lv, Ming-Ju;
Zhu, Xin-Guang;
Chin, Francis Y. L.

Publication type:

Article

Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i89, doi. 10.1093/bioinformatics/btt231

By:

Le, Hai-Son;
Bar-Joseph, Ziv

Publication type:

Article

A universal open-source Electronic Laboratory Notebook.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1710, doi. 10.1093/bioinformatics/btt253

By:

Voegele, Catherine;
Bouchereau, Baptiste;
Robinot, Nivonirina;
McKay, James;
Damiecki, Philippe;
Alteyrac, Lucile

Publication type:

Article

Evidence for the dissemination of cryptic non-coding RNAs transcribed from intronic and intergenic segments by retroposition.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1593, doi. 10.1093/bioinformatics/btt258

By:

Hahn, Yoonsoo

Publication type:

Article

BioBlend: automating pipeline analyses within Galaxy and CloudMan.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1685, doi. 10.1093/bioinformatics/btt199

By:

Sloggett, Clare;
Goonasekera, Nuwan;
Afgan, Enis

Publication type:

Article

Stability selection for regression-based models of transcription factor–DNA binding specificity.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i117, doi. 10.1093/bioinformatics/btt221

By:

Mordelet, Fantine;
Horton, John;
Hartemink, Alexander J.;
Engelhardt, Barbara E.;
Gordân, Raluca

Publication type:

Article

Protein threading using context-specific alignment potential.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i257

By:

Ma, Jianzhu;
Wang, Sheng;
Zhao, Feng;
Xu, Jinbo

Publication type:

Article

Automated target segmentation and real space fast alignment methods for high-throughput classification and averaging of crowded cryo-electron subtomograms.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i274, doi. 10.1093/bioinformatics/btt225

By:

Xu, Min;
Alber, Frank

Publication type:

Article

A high-throughput framework to detect synapses in electron microscopy images.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i9, doi. 10.1093/bioinformatics/btt222

By:

Navlakha, Saket;
Suhan, Joseph;
Barth, Alison L.;
Bar-Joseph, Ziv

Publication type:

Article

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1687, doi. 10.1093/bioinformatics/btt203

By:

Rubio-Camarillo, Miriam;
Gómez-López, Gonzalo;
Fernández, José M.;
Valencia, Alfonso;
Pisano, David G.

Publication type:

Article

Identifying proteins controlling key disease signaling pathways.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i227, doi. 10.1093/bioinformatics/btt241

By:

Gitter, Anthony;
Bar-Joseph, Ziv

Publication type:

Article

Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i189, doi. 10.1093/bioinformatics/btt205

By:

Chowdhury, Salim Akhter;
Shackney, Stanley E.;
Heselmeyer-Haddad, Kerstin;
Ried, Thomas;
Schäffer, Alejandro A.;
Schwartz, Russell

Publication type:

Article

Predicting protein contact map using evolutionary and physical constraints by integer programming.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i266, doi. 10.1093/bioinformatics/btt211

By:

Wang, Zhiyong;
Xu, Jinbo

Publication type:

Article

CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i145, doi. 10.1093/bioinformatics/btt235

By:

Abaka, Gamze;
Bıyıkoğlu, Türker;
Erten, Cesim

Publication type:

Article

The RNA Newton polytope and learnability of energy parameters.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i300, doi. 10.1093/bioinformatics/btt226

By:

Forouzmand, Elmirasadat;
Chitsaz, Hamidreza

Publication type:

Article

Multitask learning for host–pathogen protein interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i217, doi. 10.1093/bioinformatics/btt245

By:

Kshirsagar, Meghana;
Carbonell, Jaime;
Klein-Seetharaman, Judith

Publication type:

Article

ISMB/ECCB 2013 Proceedings Papers Committee.

Published in:: Bioinformatics, 2013, v. 29, n. 13, p. i3, doi. 10.1093/bioinformatics/btt281
Publication type:: Article

Sharing and executing linked data queries in a collaborative environment.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1663, doi. 10.1093/bioinformatics/btt192

By:

García Godoy, María Jesús;
López-Camacho, Esteban;
Navas-Delgado, Ismael;
Aldana-Montes, José F.

Publication type:

Article

Learning subgroup-specific regulatory interactions and regulator independence with PARADIGM.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i62, doi. 10.1093/bioinformatics/btt229

By:

Sedgewick, Andrew J.;
Benz, Stephen C.;
Rabizadeh, Shahrooz;
Soon-Shiong, Patrick;
Vaske, Charles J.

Publication type:

Article

Relation between sequence and structure in membrane proteins.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1589, doi. 10.1093/bioinformatics/btt249

By:

Olivella, Mireia;
Gonzalez, Angel;
Pardo, Leonardo;
Deupi, Xavier

Publication type:

Article

ThreaDom: extracting protein domain boundary information from multiple threading alignments.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i247, doi. 10.1093/bioinformatics/btt209

By:

Xue, Zhidong;
Xu, Dong;
Wang, Yan;
Zhang, Yang

Publication type:

Article

Short read alignment with populations of genomes.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i361, doi. 10.1093/bioinformatics/btt215

By:

Huang, Lin;
Popic, Victoria;
Batzoglou, Serafim

Publication type:

Article

Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i199, doi. 10.1093/bioinformatics/btt208

By:

Cannistraci, Carlo Vittorio;
Alanis-Lobato, Gregorio;
Ravasi, Timothy

Publication type:

Article

Editorial.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i1, doi. 10.1093/bioinformatics/btt282

By:

Ben-Tal, Nir

Publication type:

Article

Efficient network-guided multi-locus association mapping with graph cuts.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i171, doi. 10.1093/bioinformatics/btt238

By:

Azencott, Chloé-Agathe;
Grimm, Dominik;
Sugiyama, Mahito;
Kawahara, Yoshinobu;
Borgwardt, Karsten M.

Publication type:

Article

RSVSim: an R/Bioconductor package for the simulation of structural variations.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. 1679, doi. 10.1093/bioinformatics/btt198

By:

Bartenhagen, Christoph;
Dugas, Martin

Publication type:

Article

Using state machines to model the Ion Torrent sequencing process and to improve read error rates.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i344, doi. 10.1093/bioinformatics/btt212

By:

Golan, David;
Medvedev, Paul

Publication type:

Article

Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans.

Published in:

Bioinformatics, 2013, v. 29, n. 13, p. i18, doi. 10.1093/bioinformatics/btt223

By:

Aerni, Sarah J.;
Liu, Xiao;
Do, Chuong B.;
Gross, Samuel S.;
Nguyen, Andy;
Guo, Stephen D.;
Long, Fuhui;
Peng, Hanchuan;
Kim, Stuart S.;
Batzoglou, Serafim

Publication type:

Article