Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 11

Results: 24

LibSBMLSim: a reference implementation of fully functional SBML simulator.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1474, doi. 10.1093/bioinformatics/btt157

By:

Takizawa, Hiromu;
Nakamura, Kazushige;
Tabira, Akito;
Chikahara, Yoichi;
Matsui, Tatsuhiro;
Hiroi, Noriko;
Funahashi, Akira

Publication type:

Article

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1448, doi. 10.1093/bioinformatics/btt170

By:

Xiao, Hang;
Peng, Hanchuan

Publication type:

Article

PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1465, doi. 10.1093/bioinformatics/btt146

By:

Fried, Jake Y.;
van Iersel, Martijn P.;
Aladjem, Mirit I.;
Kohn, Kurt W.;
Luna, Augustin

Publication type:

Article

Fast simulation of reconstructed phylogenies under global time-dependent birth–death processes.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1367, doi. 10.1093/bioinformatics/btt153

By:

Höhna, Sebastian

Publication type:

Article

NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1471, doi. 10.1093/bioinformatics/btt164

By:

Kacprowski, Tim;
Doncheva, Nadezhda T.;
Albrecht, Mario

Publication type:

Article

MonaLisa—visualization and analysis of functional modules in biochemical networks.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1469, doi. 10.1093/bioinformatics/btt165

By:

Einloft, Jens;
Ackermann, Jörg;
Nöthen, Joachim;
Koch, Ina

Publication type:

Article

ELOPER: elongation of paired-end reads as a pre-processing tool for improved de novo genome assembly.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1455, doi. 10.1093/bioinformatics/btt169

By:

Silver, David H.;
Ben-Elazar, Shay;
Bogoslavsky, Alexei;
Yanai, Itai

Publication type:

Article

Detecting regulatory gene–environment interactions with unmeasured environmental factors.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1382, doi. 10.1093/bioinformatics/btt148

By:

Fusi, Nicoló;
Lippert, Christoph;
Borgwardt, Karsten;
Lawrence, Neil D.;
Stegle, Oliver

Publication type:

Article

A novel web server predicts amino acid residue protection against hydrogen–deuterium exchange.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1375, doi. 10.1093/bioinformatics/btt168

By:

Lobanov, Mikhail Yu.;
Suvorina, Masha Yu.;
Dovidchenko, Nikita V.;
Sokolovskiy, Igor V.;
Surin, Alexey K.;
Galzitskaya, Oxana V.

Publication type:

Article

KGVDB: a population-based genomic map of CNVs tagged by SNPs in Koreans.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1481, doi. 10.1093/bioinformatics/btt173

By:

Moon, Sanghoon;
Jung, Kwang Su;
Kim, Young Jin;
Hwang, Mi Yeong;
Han, Kyungsook;
Lee, Jong-Young;
Park, Kiejung;
Kim, Bong-Jo

Publication type:

Article

Biographer: web-based editing and rendering of SBGN compliant biochemical networks.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1467, doi. 10.1093/bioinformatics/btt159

By:

Krause, Falko;
Schulz, Marvin;
Ripkens, Ben;
Flöttmann, Max;
Krantz, Marcus;
Klipp, Edda;
Handorf, Thomas

Publication type:

Article

MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1458, doi. 10.1093/bioinformatics/btt150

By:

Wang, Yupeng;
Li, Jingping;
Paterson, Andrew H.

Publication type:

Article

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1407, doi. 10.1093/bioinformatics/btt166

By:

Pasaniuc, Bogdan;
Sankararaman, Sriram;
Torgerson, Dara G.;
Gignoux, Christopher;
Zaitlen, Noah;
Eng, Celeste;
Rodriguez-Cintron, William;
Chapela, Rocio;
Ford, Jean G.;
Avila, Pedro C.;
Rodriguez-Santana, Jose;
Chen, Gary K.;
Le Marchand, Loic;
Henderson, Brian;
Reich, David;
Haiman, Christopher A.;
Gonzàlez Burchard, Esteban;
Halperin, Eran

Publication type:

Article

OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1416, doi. 10.1093/bioinformatics/btt167

By:

Lim, Néhémy;
Şenbabaoğlu, Yasin;
Michailidis, George;
d’Alché-Buc, Florence

Publication type:

Article

A support vector machine for identification of single-nucleotide polymorphisms from next-generation sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1361, doi. 10.1093/bioinformatics/btt172

By:

O’Fallon, Brendan D.;
Wooderchak-Donahue, Whitney;
Crockett, David K.

Publication type:

Article

RegaDB: community-driven data management and analysis for infectious diseases.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1477, doi. 10.1093/bioinformatics/btt162

By:

Libin, Pieter;
Beheydt, Gertjan;
Deforche, Koen;
Imbrechts, Stijn;
Ferreira, Fossie;
Van Laethem, Kristel;
Theys, Kristof;
Carvalho, Ana Patricia;
Cavaco-Silva, Joana;
Lapadula, Giuseppe;
Torti, Carlo;
Assel, Matthias;
Wesner, Stefan;
Snoeck, Joke;
Ruelle, Jean;
De Bel, Annelies;
Lacor, Patrick;
De Munter, Paul;
Van Wijngaerden, Eric;
Zazzi, Maurizio

Publication type:

Article

Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1484, doi. 10.1093/bioinformatics/btt161

By:

Kalkatawi, Manal;
Rangkuti, Farania;
Schramm, Michael;
Jankovic, Boris R.;
Kamau, Allan;
Chowdhary, Rajesh;
Archer, John A. C.;
Bajic, Vladimir B.

Publication type:

Article

Measuring gene functional similarity based on group-wise comparison of GO terms.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1424, doi. 10.1093/bioinformatics/btt160

By:

Teng, Zhixia;
Guo, Maozu;
Liu, Xiaoyan;
Dai, Qiguo;
Wang, Chunyu;
Xuan, Ping

Publication type:

Article

FishingCNV: a graphical software package for detecting rare copy number variations in exome-sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1461, doi. 10.1093/bioinformatics/btt151

By:

Shi, Yuhao;
Majewski, Jacek

Publication type:

Article

Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mers.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1390, doi. 10.1093/bioinformatics/btt152

By:

Jiang, Bo;
Liu, Jun S.;
Bulyk, Martha L.

Publication type:

Article

Active learning-based information structure analysis of full scientific articles and two applications for biomedical literature review.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1440, doi. 10.1093/bioinformatics/btt163

By:

Guo, Yufan;
Silins, Ilona;
Stenius, Ulla;
Korhonen, Anna

Publication type:

Article

A tool for RNA sequencing sample identity check.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1463, doi. 10.1093/bioinformatics/btt155

By:

Huang, Jinyan;
Chen, Jun;
Lathrop, Mark;
Liang, Liming

Publication type:

Article

tmVar: a text mining approach for extracting sequence variants in biomedical literature.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1433, doi. 10.1093/bioinformatics/btt156

By:

Wei, Chih-Hsuan;
Harris, Bethany R.;
Kao, Hung-Yu;
Lu, Zhiyong

Publication type:

Article

Improved ancestry inference using weights from external reference panels.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1399, doi. 10.1093/bioinformatics/btt144

By:

Chen, Chia-Yen;
Pollack, Samuela;
Hunter, David J.;
Hirschhorn, Joel N.;
Kraft, Peter;
Price, Alkes L.

Publication type:

Article