Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 10

Results: 21

Sorad: a systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1283, doi. 10.1093/bioinformatics/btt130

By:

Äijö, Tarmo;
Granberg, Kirsi;
Lähdesmäki, Harri

Publication type:

Article

Network-guided sparse regression modeling for detection of gene-by-gene interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1241, doi. 10.1093/bioinformatics/btt139

By:

Lu, Chen;
Latourelle, Jeanne;
O’Connor, George T.;
Dupuis, Josée;
Kolaczyk, Eric D.

Publication type:

Article

DP2: Distributed 3D image segmentation using micro-labor workforce.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1359, doi. 10.1093/bioinformatics/btt154

By:

Giuly, Richard J.;
Kim, Keun-Young;
Ellisman, Mark H.

Publication type:

Article

Cytoscape App Store.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1350, doi. 10.1093/bioinformatics/btt138

By:

Lotia, Samad;
Montojo, Jason;
Dong, Yue;
Bader, Gary D.;
Pico, Alexander R.

Publication type:

Article

CistromeFinder for ChIP-seq and DNase-seq data reuse.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1352, doi. 10.1093/bioinformatics/btt135

By:

Sun, Hanfei;
Qin, Bo;
Liu, Tao;
Wang, Qixuan;
Liu, Jing;
Wang, Juan;
Lin, Xueqiu;
Yang, Yulin;
Taing, Len;
Rao, Prakash K.;
Brown, Myles;
Zhang, Yong;
Long, Henry W.;
Liu, X. Shirley

Publication type:

Article

BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1250, doi. 10.1093/bioinformatics/btt127

By:

Bao, Ergude;
Jiang, Tao;
Girke, Thomas

Publication type:

Article

Programming strategy for efficient modeling of dynamics in a population of heterogeneous cells.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1292, doi. 10.1093/bioinformatics/btt132

By:

Hald, Bjørn Olav;
Garkier Hendriksen, Morten;
Sørensen, Preben Graae

Publication type:

Article

EPSILON: an eQTL prioritization framework using similarity measures derived from local networks.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1308, doi. 10.1093/bioinformatics/btt142

By:

Verbeke, Lieven P. C.;
Cloots, Lore;
Demeester, Piet;
Fostier, Jan;
Marchal, Kathleen

Publication type:

Article

Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1275, doi. 10.1093/bioinformatics/btt143

By:

Yu, Danni;
Huber, Wolfgang;
Vitek, Olga

Publication type:

Article

Density-based hierarchical clustering of pyro-sequences on a large scale—the case of fungal ITS1.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1268, doi. 10.1093/bioinformatics/btt149

By:

Pagni, Marco;
Niculita-Hirzel, Hélène;
Pellissier, Loïc;
Dubuis, Anne;
Xenarios, Ioannis;
Guisan, Antoine;
Sanders, Ian R.;
Goudet, Jérôme;
Guex, Nicolas

Publication type:

Article

Analyzing genome coverage profiles with applications to quality control in metagenomics.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1260, doi. 10.1093/bioinformatics/btt147

By:

Lindner, Martin S.;
Kollock, Maximilian;
Zickmann, Franziska;
Renard, Bernhard Y.

Publication type:

Article

An accessible database for mouse and human whole transcriptome qPCR primers.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1355, doi. 10.1093/bioinformatics/btt145

By:

Zeisel, Amit;
Yitzhaky, Assif;
Bossel Ben-Moshe, Noa;
Domany, Eytan

Publication type:

Article

HAL: a hierarchical format for storing and analyzing multiple genome alignments.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1341, doi. 10.1093/bioinformatics/btt128

By:

Hickey, Glenn;
Paten, Benedict;
Earl, Dent;
Zerbino, Daniel;
Haussler, David

Publication type:

Article

TfReg: calculating DNA and RNA melting temperatures and opening profiles with mesoscopic models.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1345, doi. 10.1093/bioinformatics/btt133

By:

Weber, Gerald

Publication type:

Article

SRV: an open-source toolbox to accelerate the recovery of metabolic biomarkers and correlations from metabolic phenotyping datasets.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1348, doi. 10.1093/bioinformatics/btt136

By:

Navratil, Vincent;
Pontoizeau, Clément;
Billoir, Elise;
Blaise, Benjamin J.

Publication type:

Article

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1325, doi. 10.1093/bioinformatics/btt113

By:

Ison, Jon;
Kalaš, Matúš;
Jonassen, Inge;
Bolser, Dan;
Uludag, Mahmut;
McWilliam, Hamish;
Malone, James;
Lopez, Rodrigo;
Pettifer, Steve;
Rice, Peter

Publication type:

Article

Network predicting drug’s anatomical therapeutic chemical code.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1317, doi. 10.1093/bioinformatics/btt158

By:

Wang, Yong-Cui;
Chen, Shi-Long;
Deng, Nai-Yang;
Wang, Yong

Publication type:

Article

A unifying kinetic framework for modeling oxidoreductase-catalyzed reactions.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1299, doi. 10.1093/bioinformatics/btt140

By:

Chang, Ivan;
Baldi, Pierre

Publication type:

Article

Effectively addressing complex proteomic search spaces with peptide spectrum matching.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1343, doi. 10.1093/bioinformatics/btt106

By:

Borges, Diogo;
Perez-Riverol, Yasset;
Nogueira, Fabio C. S.;
Domont, Gilberto B.;
Noda, Jesus;
da Veiga Leprevost, Felipe;
Besada, Vladimir;
França, Felipe M. G.;
Barbosa, Valmir C.;
Sánchez, Aniel;
Carvalho, Paulo C.

Publication type:

Article

A self-updating road map of The Cancer Genome Atlas.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1333, doi. 10.1093/bioinformatics/btt141

By:

Robbins, David E.;
Grüneberg, Alexander;
Deus, Helena F.;
Tanik, Murat M.;
Almeida, Jonas S.

Publication type:

Article

PHISTO: pathogen–host interaction search tool.

Published in:

Bioinformatics, 2013, v. 29, n. 10, p. 1357, doi. 10.1093/bioinformatics/btt137

By:

Durmuş Tekir, Saliha;
Çakır, Tunahan;
Ardıç, Emre;
Sayılırbaş, Ali Semih;
Konuk, Gökhan;
Konuk, Mithat;
Sarıyer, Hasret;
Uğurlu, Azat;
Karadeniz, İlknur;
Özgür, Arzucan;
Sevilgen, Fatih Erdoğan;
Ülgen, Kutlu Ö.

Publication type:

Article