Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 1

Results: 28

MP-T: improving membrane protein alignment for structure prediction.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 54, doi. 10.1093/bioinformatics/bts640

By:

Hill, Jamie R.;
Deane, Charlotte M.

Publication type:

Article

Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 8, doi. 10.1093/bioinformatics/bts621

By:

Andreatta, Massimo;
Lund, Ole;
Nielsen, Morten

Publication type:

Article

MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 122, doi. 10.1093/bioinformatics/bts567

By:

Zhu, Zhengwei;
Niu, Beifang;
Chen, Jing;
Wu, Sitao;
Sun, Shulei;
Li, Weizhong

Publication type:

Article

A hidden Markov model to identify combinatorial epigenetic regulation patterns for estrogen receptor α target genes.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 22, doi. 10.1093/bioinformatics/bts639

By:

Bonneville, Russell;
Jin, Victor X.

Publication type:

Article

XiP: a computational environment to create, extend and share workflows.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 137, doi. 10.1093/bioinformatics/bts630

By:

Nagasaki, Masao;
Fujita, André;
Sekiya, Yayoi;
Saito, Ayumu;
Ikeda, Emi;
Li, Chen;
Miyano, Satoru

Publication type:

Article

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 106, doi. 10.1093/bioinformatics/bts619

By:

Zhang, Xiujun;
Liu, Keqin;
Liu, Zhi-Ping;
Duval, Béatrice;
Richer, Jean-Michel;
Zhao, Xing-Ming;
Hao, Jin-Kao;
Chen, Luonan

Publication type:

Article

LOGICOIL—multi-state prediction of coiled-coil oligomeric state.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 69, doi. 10.1093/bioinformatics/bts648

By:

Vincent, Thomas L.;
Green, Peter J.;
Woolfson, Derek N.

Publication type:

Article

Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 126, doi. 10.1093/bioinformatics/bts637

By:

Vlachakis, Dimitrios;
Tsagrasoulis, Dimosthenis;
Megalooikonomou, Vasileios;
Kossida, Sophia

Publication type:

Article

Pathway hunting by random survival forests.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 99, doi. 10.1093/bioinformatics/bts643

By:

Chen, Xi;
Ishwaran, Hemant

Publication type:

Article

Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 84, doi. 10.1093/bioinformatics/bts632

By:

Menelaou, Androniki;
Marchini, Jonathan

Publication type:

Article

13CFLUX2—high-performance software suite for 13C-metabolic flux analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 143, doi. 10.1093/bioinformatics/bts646

By:

Weitzel, Michael;
Nöh, Katharina;
Dalman, Tolga;
Niedenführ, Sebastian;
Stute, Birgit;
Wiechert, Wolfgang

Publication type:

Article

Binary Interval Search: a scalable algorithm for counting interval intersections.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 1, doi. 10.1093/bioinformatics/bts652

By:

Layer, Ryan M.;
Skadron, Kevin;
Robins, Gabriel;
Hall, Ira M.;
Quinlan, Aaron R.

Publication type:

Article

RIP-chip enrichment analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 77, doi. 10.1093/bioinformatics/bts631

By:

Erhard, Florian;
Dölken, Lars;
Zimmer, Ralf

Publication type:

Article

Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 117, doi. 10.1093/bioinformatics/bts638

By:

Magana-Mora, Arturo;
Ashoor, Haitham;
Jankovic, Boris R.;
Kamau, Allan;
Awara, Karim;
Chowdhary, Rajesh;
Archer, John A.C.;
Bajic, Vladimir B.

Publication type:

Article

Rare variant discovery and calling by sequencing pooled samples with overlaps.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 29, doi. 10.1093/bioinformatics/bts645

By:

Wang, Wenhui;
Yin, Xiaolin;
Soo Pyon, Yoon;
Hayes, Matthew;
Li, Jing

Publication type:

Article

DLocalMotif: a discriminative approach for discovering local motifs in protein sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 39, doi. 10.1093/bioinformatics/bts654

By:

Mehdi, Ahmed M.;
Sehgal, Muhammad Shoaib B.;
Kobe, Bostjan;
Bailey, Timothy L.;
Bodén, Mikael

Publication type:

Article

Towards the development of standardized methods for comparison, ranking and evaluation of structure alignments.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 47, doi. 10.1093/bioinformatics/bts600

By:

Slater, Alex W.;
Castellanos, Javier I.;
Sippl, Manfred J.;
Melo, Francisco

Publication type:

Article

DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 132, doi. 10.1093/bioinformatics/bts656

By:

Pacini, Clare;
Iorio, Francesco;
Gonçalves, Emanuel;
Iskar, Murat;
Klabunde, Thomas;
Bork, Peer;
Saez-Rodriguez, Julio

Publication type:

Article

AffyRNADegradation: control and correction of RNA quality effects in GeneChip expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 129, doi. 10.1093/bioinformatics/bts629

By:

Fasold, Mario;
Binder, Hans

Publication type:

Article

Human protein–protein interaction prediction by a novel sequence-based co-evolution method: co-evolutionary divergence.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 92, doi. 10.1093/bioinformatics/bts620

By:

Hsin Liu, Chia;
Li, Ker-Chau;
Yuan, Shinsheng

Publication type:

Article

STAR: ultrafast universal RNA-seq aligner.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 15, doi. 10.1093/bioinformatics/bts635

By:

Dobin, Alexander;
Davis, Carrie A.;
Schlesinger, Felix;
Drenkow, Jorg;
Zaleski, Chris;
Jha, Sonali;
Batut, Philippe;
Chaisson, Mark;
Gingeras, Thomas R.

Publication type:

Article

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 135, doi. 10.1093/bioinformatics/bts647

By:

Huang, Hailiang;
Tata, Sandeep;
Prill, Robert J.

Publication type:

Article

PriVar: a toolkit for prioritizing SNVs and indels from next-generation sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 124, doi. 10.1093/bioinformatics/bts627

By:

Zhang, Lu;
Zhang, Jing;
Yang, Jing;
Ying, Dingge;
Lau, Yu lung;
Yang, Wanling

Publication type:

Article

MetaGeneTack: ab initio detection of frameshifts in metagenomic sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 114, doi. 10.1093/bioinformatics/bts636

By:

Tang, Shiyuyun;
Antonov, Ivan;
Borodovsky, Mark

Publication type:

Article

MycPermCheck: the Mycobacterium tuberculosis permeability prediction tool for small molecules.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 62, doi. 10.1093/bioinformatics/bts641

By:

Merget, Benjamin;
Zilian, David;
Müller, Tobias;
Sotriffer, Christoph A.

Publication type:

Article

PBSIM: PacBio reads simulator—toward accurate genome assembly.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 119, doi. 10.1093/bioinformatics/bts649

By:

Ono, Yukiteru;
Asai, Kiyoshi;
Hamada, Michiaki

Publication type:

Article

ADAM: automated data management for research datasets.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 146, doi. 10.1093/bioinformatics/bts644

By:

Woodbridge, Mark;
Tomlinson, Christopher D.;
Butcher, Sarah A.

Publication type:

Article

SPSens: a software package for stochastic parameter sensitivity analysis of biochemical reaction networks.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 140, doi. 10.1093/bioinformatics/bts642

By:

Sheppard, Patrick W.;
Rathinam, Muruhan;
Khammash, Mustafa

Publication type:

Article