Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 7

Results: 30

ArchTEx: accurate extraction and visualization of next-generation sequence data.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1021, doi. 10.1093/bioinformatics/bts063

By:

Lai, William K. M.;
Bard, Jonathan E.;
Buck, Michael J.

Publication type:

Article

Mytoe: automatic analysis of mitochondrial dynamics.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1050, doi. 10.1093/bioinformatics/bts073

By:

Lihavainen, Eero;
Mäkelä, Jarno;
Spelbrink, Johannes N.;
Ribeiro, Andre S.

Publication type:

Article

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays*.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1009, doi. 10.1093/bioinformatics/bts082

By:

Aghaeepour, Nima;
Chattopadhyay, Pratip K.;
Ganesan, Anuradha;
O'Neill, Kieran;
Zare, Habil;
Jalali, Adrin;
Hoos, Holger H.;
Roederer, Mario;
Brinkman, Ryan R.

Publication type:

Article

Estimating population diversity with CatchAll.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1045, doi. 10.1093/bioinformatics/bts075

By:

Bunge, John;
Woodard, Linda;
Böhning, Dankmar;
Foster, James A.;
Connolly, Sean;
Allen, Heather K.

Publication type:

Article

Predicting kinase substrates using conservation of local motif density.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 962, doi. 10.1093/bioinformatics/bts060

By:

Lai, Andy C. W.;
Nguyen Ba, Alex N.;
Moses, Alan M.

Publication type:

Article

Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 929, doi. 10.1093/bioinformatics/bts065

By:

Kawaguchi, Shuji;
Iida, Kei;
Harada, Erimi;
Hanada, Kousuke;
Matsui, Akihiro;
Okamoto, Masanori;
Shinozaki, Kazuo;
Seki, Motoaki;
Toyoda, Tetsuro

Publication type:

Article

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1035, doi. 10.1093/bioinformatics/bts080

By:

Bonnal, Raoul J.P.;
Aerts, Jan;
Githinji, George;
Goto, Naohisa;
MacLean, Dan;
Miller, Chase A.;
Mishima, Hiroyuki;
Pagani, Massimiliano;
Ramirez-Gonzalez, Ricardo;
Smant, Geert;
Strozzi, Francesco;
Syme, Rob;
Vos, Rutger;
Wennblom, Trevor J.;
Woodcroft, Ben J.;
Katayama, Toshiaki;
Prins, Pjotr

Publication type:

Article

WaVPeak: picking NMR peaks through wavelet-based smoothing and volume-based filtering.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 914, doi. 10.1093/bioinformatics/bts078

By:

Liu, Zhi;
Abbas, Ahmed;
Jing, Bing-Yi;
Gao, Xin

Publication type:

Article

Evaluating the Drosophila Bicoid morphogen gradient system through dissecting the noise in transcriptional bursts.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 970, doi. 10.1093/bioinformatics/bts068

By:

He, Feng;
Ren, Jie;
Wang, Wei;
Ma, Jun

Publication type:

Article

A new approach to bias correction in RNA-Seq.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 921, doi. 10.1093/bioinformatics/bts055

By:

Jones, Daniel C.;
Ruzzo, Walter L.;
Peng, Xinxia;
Katze, Michael G.

Publication type:

Article

pymzML—Python module for high-throughput bioinformatics on mass spectrometry data.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1052, doi. 10.1093/bioinformatics/bts066

By:

Bald, Till;
Barth, Johannes;
Niehues, Anna;
Specht, Michael;
Hippler, Michael;
Fufezan, Christian

Publication type:

Article

Automatic recognition of conceptualization zones in scientific articles and two life science applications.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 991, doi. 10.1093/bioinformatics/bts071

By:

Liakata, Maria;
Saha, Shyamasree;
Dobnik, Simon;
Batchelor, Colin;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

DOMIRE: a web server for identifying structural domains and their neighbors in proteins.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1040, doi. 10.1093/bioinformatics/bts076

By:

Samson, Franck;
Shrager, Richard;
Tai, Chin-Hsien;
Sam, Vichetra;
Lee, Byungkook;
Munson, Peter J.;
Gibrat, Jean-François;
Garnier, Jean

Publication type:

Article

Discriminating response groups in metabolic and regulatory pathway networks.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 947, doi. 10.1093/bioinformatics/bts039

By:

Van Hemert, John L.;
Dickerson, Julie A.

Publication type:

Article

A co-module approach for elucidating drug–disease associations and revealing their molecular basis.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 955, doi. 10.1093/bioinformatics/bts057

By:

Zhao, Shiwen;
Li, Shao

Publication type:

Article

Chado Controller: advanced annotation management with a community annotation system.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1054, doi. 10.1093/bioinformatics/bts046

By:

Guignon, Valentin;
Droc, Gaëtan;
Alaux, Michael;
Baurens, Franc-Christophe;
Garsmeur, Olivier;
Poiron, Claire;
Carver, Tim;
Rouard, Mathieu;
Bocs, Stéphanie

Publication type:

Article

Genotype calling from next-generation sequencing data using haplotype information of reads.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 938, doi. 10.1093/bioinformatics/bts047

By:

Zhi, Degui;
Wu, Jihua;
Liu, Nianjun;
Zhang, Kui

Publication type:

Article

WegoLoc: accurate prediction of protein subcellular localization using weighted Gene Ontology terms.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1028, doi. 10.1093/bioinformatics/bts062

By:

Chi, Sang-Mun;
Nam, Dougu

Publication type:

Article

Susceptibility of the human pathways graphs to fragmentation by small sets of microRNAs.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 983, doi. 10.1093/bioinformatics/bts077

By:

Naamati, Guy;
Friedman, Yitzhak;
Balaga, Ohad;
Linial, Michal

Publication type:

Article

ShapePheno: unsupervised extraction of shape phenotypes from biological image collections.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1001, doi. 10.1093/bioinformatics/bts081

By:

Karaletsos, Theofanis;
Stegle, Oliver;
Dreyer, Christine;
Winn, John;
Borgwardt, Karsten M.

Publication type:

Article

SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1026, doi. 10.1093/bioinformatics/bts035

By:

Wang, Conan K.;
Broder, Ursula;
Weeratunga, Saroja K.;
Gasser, Robin B.;
Loukas, Alex;
Hofmann, Andreas

Publication type:

Article

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 907, doi. 10.1093/bioinformatics/bts053

By:

Roth, Andrew;
Ding, Jiarui;
Morin, Ryan;
Crisan, Anamaria;
Ha, Gavin;
Giuliany, Ryan;
Bashashati, Ali;
Hirst, Martin;
Turashvili, Gulisa;
Oloumi, Arusha;
Marra, Marco A.;
Aparicio, Samuel;
Shah, Sohrab P.

Publication type:

Article

IDEOM: an Excel interface for analysis of LC–MS-based metabolomics data.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1048, doi. 10.1093/bioinformatics/bts069

By:

Creek, Darren J.;
Jankevics, Andris;
Burgess, Karl E. V.;
Breitling, Rainer;
Barrett, Michael P.

Publication type:

Article

vHOG, a multispecies vertebrate ontology of homologous organs groups.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1017, doi. 10.1093/bioinformatics/bts048

By:

Niknejad, Anne;
Comte, Aurélie;
Parmentier, Gilles;
Roux, Julien;
Bastian, Frederic B.;
Robinson-Rechavi, Marc

Publication type:

Article

The identification of short linear motif-mediated interfaces within the human interactome.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 976, doi. 10.1093/bioinformatics/bts072

By:

Weatheritt, R. J.;
Luck, K.;
Petsalaki, E.;
Davey, N. E.;
Gibson, T. J.

Publication type:

Article

Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1024, doi. 10.1093/bioinformatics/bts064

By:

Sun, Ruping;
Love, Michael I.;
Zemojtel, Tomasz;
Emde, Anne-Katrin;
Chung, Ho-Ryun;
Vingron, Martin;
Haas, Stefan A.

Publication type:

Article

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1033, doi. 10.1093/bioinformatics/bts079

By:

Wu, Martin;
Scott, Alexandra J.

Publication type:

Article

Spliceman—a computational web server that predicts sequence variations in pre-mRNA splicing.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1031, doi. 10.1093/bioinformatics/bts074

By:

Lim, Kian Huat;
Fairbrother, William Guy

Publication type:

Article

xQTL workbench: a scalable web environment for multi-level QTL analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1042, doi. 10.1093/bioinformatics/bts049

By:

Arends, Danny;
van der Velde, K. Joeri;
Prins, Pjotr;
Broman, Karl W.;
Möller, Steffen;
Jansen, Ritsert C.;
Swertz, Morris A.

Publication type:

Article

Improving your target-template alignment with MODalign.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1038, doi. 10.1093/bioinformatics/bts070

By:

Barbato, Alessandro;
Benkert, Pascal;
Schwede, Torsten;
Tramontano, Anna;
Kosinski, Jan

Publication type:

Article