Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 6

Results: 29

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 878, doi. 10.1093/bioinformatics/bts061

By:

Liu, Chi-Man;
Wong, Thomas;
Wu, Edward;
Luo, Ruibang;
Yiu, Siu-Ming;
Li, Yingrui;
Wang, Bingqiang;
Yu, Chang;
Chu, Xiaowen;
Zhao, Kaiyong;
Li, Ruiqiang;
Lam, Tak-Wah

Publication type:

Article

Estimating abundances of retroviral insertion sites from DNA fragment length data.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 755, doi. 10.1093/bioinformatics/bts004

By:

Berry, Charles C.;
Gillet, Nicolas A.;
Melamed, Anat;
Gormley, Niall;
Bangham, Charles R. M.;
Bushman, Frederic D.

Publication type:

Article

Surrogate variable analysis using partial least squares (SVA-PLS) in gene expression studies.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 799, doi. 10.1093/bioinformatics/bts022

By:

Chakraborty, Sutirtha;
Datta, Somnath;
Datta, Susmita

Publication type:

Article

Gencrypt: one-way cryptographic hashes to detect overlapping individuals across samples.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 886, doi. 10.1093/bioinformatics/bts045

By:

Turchin, Michael C.;
Hirschhorn, Joel N.

Publication type:

Article

RIBER/DIBER: a software suite for crystal content analysis in the studies of protein–nucleic acid complexes.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 880, doi. 10.1093/bioinformatics/bts003

By:

Chojnowski, Grzegorz;
Bujnicki, Janusz M.;
Bochtler, Matthias

Publication type:

Article

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 882, doi. 10.1093/bioinformatics/bts034

By:

Leek, Jeffrey T.;
Johnson, W. Evan;
Parker, Hilary S.;
Jaffe, Andrew E.;
Storey, John D.

Publication type:

Article

Exact coalescent simulation of new haplotype data from existing reference haplotypes.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 838, doi. 10.1093/bioinformatics/bts033

By:

Kang, Chul Joo;
Marjoram, Paul

Publication type:

Article

Assumption weighting for incorporating heterogeneity into meta-analysis of genomic data.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 807

By:

Li, Yihan;
Ghosh, Debashis

Publication type:

Article

CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 891, doi. 10.1093/bioinformatics/btr719

By:

DeJongh, Matthew;
Bockstege, Benjamin;
Frybarger, Paul;
Hazekamp, Nicholas;
Kammeraad, Joshua;
McGeehan, Travis

Publication type:

Article

A method to infer positive selection from marker dynamics in an asexual population.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 831, doi. 10.1093/bioinformatics/btr722

By:

Illingworth, Christopher J. R.;
Mustonen, Ville

Publication type:

Article

Using biologically interrelated experiments to identify pathway genes in Arabidopsis.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 815, doi. 10.1093/bioinformatics/bts038

By:

Kim, Kyungpil;
Jiang, Keni;
Teng, Siew Leng;
Feldman, Lewis J.;
Huang, Haiyan

Publication type:

Article

TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 792, doi. 10.1093/bioinformatics/bts044

By:

Seetin, Matthew G.;
Mathews, David H.

Publication type:

Article

Toward community standards in the quest for orthologs.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 900

By:

Dessimoz, Christophe;
Gabaldón, Toni;
Roos, David S.;
Sonnhammer, Erik L. L.;
Herrero, Javier

Publication type:

Article

The Transcriptome Analysis and Comparison Explorer—T-ACE: a platform-independent, graphical tool to process large RNAseq datasets of non-model organisms.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 777, doi. 10.1093/bioinformatics/bts056

By:

Philipp, E. E. R.;
Kraemer, L.;
Mountfort, D.;
Schilhabel, M.;
Schreiber, S.;
Rosenstiel, P.

Publication type:

Article

SynaptomeDB: an ontology-based knowledgebase for synaptic genes.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 897, doi. 10.1093/bioinformatics/bts040

By:

Pirooznia, Mehdi;
Wang, Tao;
Avramopoulos, Dimitrios;
Valle, David;
Thomas, Gareth;
Huganir, Richard L.;
Goes, Fernando S.;
Potash, James B.;
Zandi, Peter P.

Publication type:

Article

PathVisio-Validator: a rule-based validation plugin for graphical pathway notations.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 889, doi. 10.1093/bioinformatics/btr694

By:

Chandan, Kumar;
van Iersel, Martijn P.;
Aladjem, Mirit I.;
Kohn, Kurt W.;
Luna, Augustin

Publication type:

Article

Automatic selection of reference taxa for protein–protein interaction prediction with phylogenetic profiling.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 851, doi. 10.1093/bioinformatics/btr720

By:

Simonsen, Martin;
Maetschke, Stefan R.;
Ragan, Mark A.

Publication type:

Article

Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome.

Published in:

2012

By:

Kohane, Isaac S.;
Valtchinov, Vladimir I.

Publication type:

Correction Notice

Literature mining of host–pathogen interactions: comparing feature-based supervised learning and language-based approaches.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 867, doi. 10.1093/bioinformatics/bts042

By:

Thieu, Thanh;
Joshi, Sneha;
Warren, Samantha;
Korkin, Dmitry

Publication type:

Article

CODEX: exploration of semantic changes between ontology versions.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 895, doi. 10.1093/bioinformatics/bts029

By:

Hartung, Michael;
Gross, Anika;
Rahm, Erhard

Publication type:

Article

A Boolean network model of the FA/BRCA pathway.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 858

By:

Rodríguez, Alfredo;
Sosa, David;
Torres, Leda;
Molina, Bertha;
Frías, Sara;
Mendoza, Luis

Publication type:

Article

Functional microRNA targets in protein coding sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 771, doi. 10.1093/bioinformatics/bts043

By:

Reczko, Martin;
Maragkakis, Manolis;
Alexiou, Panagiotis;
Grosse, Ivo;
Hatzigeorgiou, Artemis G.

Publication type:

Article

Predicting relapse prior to transplantation in chronic myeloid leukemia by integrating expert knowledge and expression data.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 823, doi. 10.1093/bioinformatics/bts059

By:

Yeung, K. Y.;
Gooley, T. A.;
Zhang, A.;
Raftery, A. E.;
Radich, J. P.;
Oehler, V. G.

Publication type:

Article

Small-molecule inhibitor starting points learned from protein–protein interaction inhibitor structure.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 784, doi. 10.1093/bioinformatics/btr717

By:

Koes, David Ryan;
Camacho, Carlos J.

Publication type:

Article

ReLA, a local alignment search tool for the identification of distal and proximal gene regulatory regions and their conserved transcription factor binding sites.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 763

By:

González, Santi;
Montserrat-Sentís, Bàrbara;
Sánchez, Friman;
Puiggròs, Montserrat;
Blanco, Enrique;
Ramirez, Alex;
Torrents, David

Publication type:

Article

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 876, doi. 10.1093/bioinformatics/bts054

By:

Niemenmaa, Matti;
Kallio, Aleksi;
Schumacher, André;
Klemelä, Petri;
Korpelainen, Eija;
Heljanko, Keijo

Publication type:

Article

Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA).

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 884, doi. 10.1093/bioinformatics/bts052

By:

Schwalb, Björn;
Schulz, Daniel;
Sun, Mai;
Zacher, Benedikt;
Dümcke, Sebastian;
Martin, Dietmar E.;
Cramer, Patrick;
Tresch, Achim

Publication type:

Article

CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 893

By:

Stojmirović, Aleksandar;
Bliskovsky, Alexander;
Yu, Yi-Kuo

Publication type:

Article

A gene-based test of association using canonical correlation analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 845, doi. 10.1093/bioinformatics/bts051

By:

Tang, Clara S.;
Ferreira, Manuel A. R.

Publication type:

Article