Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 5

Results: 32

CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 717, doi. 10.1093/bioinformatics/bts007

By:

Hentrich, Thomas;
Schulze, Julia M.;
Emberly, Eldon;
Kobor, Michael S.

Publication type:

Article

medpie: an information extraction package for medical message board posts.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 743, doi. 10.1093/bioinformatics/bts030

By:

Benton, A.;
Holmes, J. H.;
Hill, S.;
Chung, A.;
Ungar, L.

Publication type:

Article

IMID: integrated molecular interaction database.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 747, doi. 10.1093/bioinformatics/bts010

By:

Balaji, Sentil;
Mcclendon, Charles;
Chowdhary, Rajesh;
Liu, Jun S.;
Zhang, Jinfeng

Publication type:

Article

An effective statistical evaluation of ChIPseq dataset similarity.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 607, doi. 10.1093/bioinformatics/bts009

By:

D. Chikina, Maria;
G. Troyanskaya, Olga

Publication type:

Article

StochSens—matlab package for sensitivity analysis of stochastic chemical systems.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 731, doi. 10.1093/bioinformatics/btr714

By:

Komorowski, Michał;
Žurauskienė, Justina;
Stumpf, Michael P.H.

Publication type:

Article

Transformations for the compression of FASTQ quality scores of next-generation sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 628, doi. 10.1093/bioinformatics/btr689

By:

Wan, Raymond;
Anh, Vo Ngoc;
Asai, Kiyoshi

Publication type:

Article

Evaluating bacterial gene-finding HMM structures as probabilistic logic programs.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 636

By:

Mørk, Søren;
Holmes, Ian

Publication type:

Article

PHACTS, a computational approach to classifying the lifestyle of phages.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 614, doi. 10.1093/bioinformatics/bts014

By:

McNair, Katelyn;
Bailey, Barbara A.;
Edwards, Robert A.

Publication type:

Article

FX: an RNA-Seq analysis tool on the cloud.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 721, doi. 10.1093/bioinformatics/bts023

By:

Hong, Dongwan;
Rhie, Arang;
Park, Sung-Soo;
Lee, Jongkeun;
Ju, Young Seok;
Kim, Sujung;
Yu, Saet-Byeol;
Bleazard, Thomas;
Park, Hyun-Seok;
Rhee, Hwanseok;
Chong, Hyonyong;
Yang, Kap-Seok;
Lee, Yeon-Su;
Kim, In-Hoo;
Lee, Jin Soo;
Kim, Jong-Il;
Seo, Jeong-Sun

Publication type:

Article

Mining and evaluation of molecular relationships in literature.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 709, doi. 10.1093/bioinformatics/bts026

By:

Senger, Christian;
Grüning, Björn A.;
Erxleben, Anika;
Döring, Kersten;
Patel, Hitesh;
Flemming, Stephan;
Merfort, Irmgard;
Günther, Stefan

Publication type:

Article

COPICAT: a software system for predicting interactions between proteins and chemical compounds.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 745, doi. 10.1093/bioinformatics/bts031

By:

Sakakibara, Yasubumi;
Hachiya, Tsuyoshi;
Uchida, Miho;
Nagamine, Nobuyoshi;
Sugawara, Yohei;
Yokota, Masahiro;
Nakamura, Masaomi;
Popendorf, Kris;
Komori, Takashi;
Sato, Kengo

Publication type:

Article

AnnTools: a comprehensive and versatile annotation toolkit for genomic variants.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 724, doi. 10.1093/bioinformatics/bts032

By:

Makarov, Vladimir;
O'Grady, Tina;
Cai, Guiqing;
Lihm, Jayon;
Buxbaum, Joseph D.;
Yoon, Seungtai

Publication type:

Article

IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 729, doi. 10.1093/bioinformatics/bts013

By:

Wang, Dan;
Yan, Li;
Hu, Qiang;
Sucheston, Lara E.;
Higgins, Michael J.;
Ambrosone, Christine B.;
Johnson, Candace S.;
Smiraglia, Dominic J.;
Liu, Song

Publication type:

Article

SNP calling using genotype model selection on high-throughput sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 643, doi. 10.1093/bioinformatics/bts001

By:

You, Na;
Murillo, Gabriel;
Su, Xiaoquan;
Zeng, Xiaowei;
Xu, Jian;
Ning, Kang;
Zhang, Shoudong;
Zhu, Jiankang;
Cui, Xinping

Publication type:

Article

SSuMMo: rapid analysis, comparison and visualization of microbial communities.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 679, doi. 10.1093/bioinformatics/bts017

By:

Leach, Alex L. B.;
Chong, James P. J.;
Redeker, Kelly R.

Publication type:

Article

De novo motif discovery facilitates identification of interactions between transcription factors in Saccharomyces cerevisiae.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 701, doi. 10.1093/bioinformatics/bts002

By:

Chen, Mei-Ju May;
Chou, Lih-Ching;
Hsieh, Tsung-Ting;
Lee, Ding-Dar;
Liu, Kai-Wei;
Yu, Chi-Yuan;
Oyang, Yen-Jen;
Tsai, Huai-Kuang;
Chen, Chien-Yu

Publication type:

Article

Modeling community-wide molecular networks of multicellular systems.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 694, doi. 10.1093/bioinformatics/btr718

By:

Komurov, Kakajan

Publication type:

Article

Application of canonical correlation analysis for identifying viral integration preferences.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 651, doi. 10.1093/bioinformatics/bts027

By:

Gumus, Ergun;
Kursun, Olcay;
Sertbas, Ahmet;
Ustek, Duran

Publication type:

Article

Interactome–transcriptome integration for predicting distant metastasis in breast cancer.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 672, doi. 10.1093/bioinformatics/bts025

By:

Garcia, Maxime;
Millat-Carus, Raphaelle;
Bertucci, François;
Finetti, Pascal;
Birnbaum, Daniel;
Bidaut, Ghislain

Publication type:

Article

MetExtract: a new software tool for the automated comprehensive extraction of metabolite-derived LC/MS signals in metabolomics research.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 736, doi. 10.1093/bioinformatics/bts012

By:

Bueschl, Christoph;
Kluger, Bernhard;
Berthiller, Franz;
Lirk, Gerald;
Winkler, Stephan;
Krska, Rudolf;
Schuhmacher, Rainer

Publication type:

Article

A scalable and portable framework for massively parallel variable selection in genetic association studies.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 719, doi. 10.1093/bioinformatics/bts015

By:

Chen, Gary K.

Publication type:

Article

NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 734, doi. 10.1093/bioinformatics/btr721

By:

Carr, Rogan;
Borenstein, Elhanan

Publication type:

Article

Roundup 2.0: enabling comparative genomics for over 1800 genomes.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 715, doi. 10.1093/bioinformatics/bts006

By:

DeLuca, Todd F.;
Cui, Jike;
Jung, Jae-Yoon;
St. Gabriel, Kristian Che;
Wall, Dennis P.

Publication type:

Article

nEASE: a method for gene ontology subclassification of high-throughput gene expression data.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 726, doi. 10.1093/bioinformatics/bts011

By:

Chittenden, Thomas W.;
Howe, Eleanor A.;
Taylor, Jennifer M.;
Mar, Jessica C.;
Aryee, Martin J.;
Gómez, Harold;
Sultana, Razvan;
Braisted, John;
Nair, Sarita J.;
Quackenbush, John;
Holmes, Chris

Publication type:

Article

Predicting folding free energy changes upon single point mutations.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 664, doi. 10.1093/bioinformatics/bts005

By:

Zhang, Zhe;
Wang, Lin;
Gao, Yang;
Zhang, Jie;
Zhenirovskyy, Maxim;
Alexov, Emil

Publication type:

Article

Mining and integration of pathway diagrams from imaging data.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 739, doi. 10.1093/bioinformatics/bts018

By:

Kozhenkov, Sergey;
Baitaluk, Michael

Publication type:

Article

Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 619, doi. 10.1093/bioinformatics/bts019

By:

Emde, Anne-Katrin;
Schulz, Marcel H.;
Weese, David;
Sun, Ruping;
Vingron, Martin;
Kalscheuer, Vera M.;
Haas, Stefan A.;
Reinert, Knut

Publication type:

Article

BESC knowledgebase public portal†.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 750, doi. 10.1093/bioinformatics/bts016

By:

Syed, Mustafa H.;
Karpinets, Tatiana V.;
Parang, Morey;
Leuze, Michael R.;
Park, Byung H.;
Hyatt, Doug;
Brown, Steven D.;
Moulton, Steve;
Galloway, Michael D.;
Uberbacher, Edward C.

Publication type:

Article

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 656, doi. 10.1093/bioinformatics/bts028

By:

Göke, Jonathan;
Schulz, Marcel H.;
Lasserre, Julia;
Vingron, Martin

Publication type:

Article

influx_s: increasing numerical stability and precision for metabolic flux analysis in isotope labelling experiments.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 687

By:

Sokol, Serguei;
Millard, Pierre;
Portais, Jean-Charles

Publication type:

Article

GROMACS molecule & liquid database.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 752, doi. 10.1093/bioinformatics/bts020

By:

van der Spoel, David;
van Maaren, Paul J.;
Caleman, Carl

Publication type:

Article

The evolution of nitrogen fixation in cyanobacteria.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 603, doi. 10.1093/bioinformatics/bts008

By:

Latysheva, Natasha;
Junker, Vivien L.;
Palmer, William J.;
Codd, Geoffrey A.;
Barker, Daniel

Publication type:

Article