Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 3

Results: 31

SCPC: a method to structurally compare protein complexes.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 324, doi. 10.1093/bioinformatics/btr654

By:

Koike, Ryotaro;
Ota, Motonori

Publication type:

Article

Construction and completion of flux balance models from pathway databases.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 388, doi. 10.1093/bioinformatics/btr681

By:

Latendresse, Mario;
Krummenacker, Markus;
Trupp, Miles;
Karp, Peter D.

Publication type:

Article

NRPSsp: non-ribosomal peptide synthase substrate predictor.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 426, doi. 10.1093/bioinformatics/btr659

By:

Prieto, Carlos;
García-Estrada, Carlos;
Lorenzana, Diego;
Martín, Juan Francisco

Publication type:

Article

A simple statistical test to infer the causality of target/phenotype correlation from small molecule phenotypic screens.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 301, doi. 10.1093/bioinformatics/btr676

By:

Wei, Xin;
Hoffman, Ann F.;
Hamilton, Shannon M.;
Xiang, Qing;
He, Yang;
So, W. Venus;
So, Sung-Sau;
Mark, David

Publication type:

Article

PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 446, doi. 10.1093/bioinformatics/btr656

By:

Glaab, Enrico;
Schneider, Reinhard

Publication type:

Article

Integrating human and murine anatomical gene expression data for improved comparisons.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 397

By:

Jiménez-Lozano, Natalia;
Segura, Joan;
Macías, José Ramón;
Vega, Juanjo;
Carazo, José María

Publication type:

Article

Gaussian process modelling for bicoid mRNA regulation in spatio-temporal Bicoid profile.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 366, doi. 10.1093/bioinformatics/btr658

By:

Liu, Wei;
Niranjan, Mahesan

Publication type:

Article

Integrated annotation and analysis of genetic variants from next-generation sequencing studies with variant tools.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 421, doi. 10.1093/bioinformatics/btr667

By:

San Lucas, F. Anthony;
Wang, Gao;
Scheet, Paul;
Peng, Bo

Publication type:

Article

PGAP: pan-genomes analysis pipeline.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 416, doi. 10.1093/bioinformatics/btr655

By:

Zhao, Yongbing;
Wu, Jiayan;
Yang, Junhui;
Sun, Shixiang;
Xiao, Jingfa;
Yu, Jun

Publication type:

Article

B-SOLANA: an approach for the analysis of two-base encoding bisulfite sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 428, doi. 10.1093/bioinformatics/btr660

By:

Kreck, Benjamin;
Marnellos, George;
Richter, Julia;
Krueger, Felix;
Siebert, Reiner;
Franke, Andre

Publication type:

Article

seeQTL: a searchable database for human eQTLs.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 451, doi. 10.1093/bioinformatics/btr678

By:

Xia, Kai;
Shabalin, Andrey A.;
Huang, Shunping;
Madar, Vered;
Zhou, Yi-Hui;
Wang, Wei;
Zou, Fei;
Sun, Wei;
Sullivan, Patrick F.;
Wright, Fred A.

Publication type:

Article

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 373, doi. 10.1093/bioinformatics/btr661

By:

Karnovsky, Alla;
Weymouth, Terry;
Hull, Tim;
Tarcea, V. Glenn;
Scardoni, Giovanni;
Laudanna, Carlo;
Sartor, Maureen A.;
Stringer, Kathleen A.;
Jagadish, H. V.;
Burant, Charles;
Athey, Brian;
Omenn, Gilbert S.

Publication type:

Article

DMAN: a Java tool for analysis of multi-well differential scanning fluorimetry experiments.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 439, doi. 10.1093/bioinformatics/btr664

By:

Wang, Conan K.;
Weeratunga, Saroja K.;
Pacheco, Chris M.;
Hofmann, Andreas

Publication type:

Article

SNPxGE2: a database for human SNP–coexpression associations.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 403, doi. 10.1093/bioinformatics/btr663

By:

Wang, Yupeng;
Joseph, Sandeep J.;
Liu, Xinyu;
Kelley, Michael;
Rekaya, Romdhane

Publication type:

Article

The Virtual Fly Brain browser and query interface.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 411, doi. 10.1093/bioinformatics/btr677

By:

Milyaev, Nestor;
Osumi-Sutherland, David;
Reeve, Simon;
Burton, Nicholas;
Baldock, Richard A.;
Armstrong, J. Douglas

Publication type:

Article

MTBindingSim: simulate protein binding to microtubules.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 441, doi. 10.1093/bioinformatics/btr684

By:

Philip, Julia T.;
Pence, Charles H.;
Goodson, Holly V.

Publication type:

Article

GWAtoolbox: an R package for fast quality control and handling of genome-wide association studies meta-analysis data.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 444, doi. 10.1093/bioinformatics/btr679

By:

Fuchsberger, Christian;
Taliun, Daniel;
Pramstaller, Peter P.;
Pattaro, Cristian

Publication type:

Article

SomaticSniper: identification of somatic point mutations in whole genome sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 311, doi. 10.1093/bioinformatics/btr665

By:

Larson, David E.;
Harris, Christopher C.;
Chen, Ken;
Koboldt, Daniel C.;
Abbott, Travis E.;
Dooling, David J.;
Ley, Timothy J.;
Mardis, Elaine R.;
Wilson, Richard K.;
Ding, Li

Publication type:

Article

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 423, doi. 10.1093/bioinformatics/btr670

By:

Boeva, Valentina;
Popova, Tatiana;
Bleakley, Kevin;
Chiche, Pierre;
Cappo, Julie;
Schleiermacher, Gudrun;
Janoueix-Lerosey, Isabelle;
Delattre, Olivier;
Barillot, Emmanuel

Publication type:

Article

HydroPaCe: understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 342

By:

Gonçalves-Almeida, V. M.;
Pires, D. E. V.;
de Melo-Minardi, R. C.;
da Silveira, C. H.;
Meira, W.;
Santoro, M. M.

Publication type:

Article

SitePainter: a tool for exploring biogeographical patterns.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 436, doi. 10.1093/bioinformatics/btr685

By:

Gonzalez, Antonio;
Stombaugh, Jesse;
Lauber, Christian L.;
Fierer, Noah;
Knight, Rob

Publication type:

Article

RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 430, doi. 10.1093/bioinformatics/btr668

By:

Xi, Yuanxin;
Bock, Christoph;
Müller, Fabian;
Sun, Deqiang;
Meissner, Alexander;
Li, Wei

Publication type:

Article

Identification and removal of ribosomal RNA sequences from metatranscriptomes.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 433, doi. 10.1093/bioinformatics/btr669

By:

Schmieder, Robert;
Lim, Yan Wei;
Edwards, Robert

Publication type:

Article

Prediction and analysis of nucleotide-binding residues using sequence and sequence-derived structural descriptors.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 331, doi. 10.1093/bioinformatics/btr657

By:

Chen, Ke;
Mizianty, Marcin J.;
Kurgan, Lukasz

Publication type:

Article

InFiRe — a novel computational method for the identification of insertion sites in transposon mutagenized bacterial genomes.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 306, doi. 10.1093/bioinformatics/btr672

By:

Shevchuk, Olga;
Roselius, Louisa;
Günther, Gabriele;
Klein, Johannes;
Jahn, Dieter;
Steinert, Michael;
Münch, Richard

Publication type:

Article

Detection of microRNAs in color space.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 318, doi. 10.1093/bioinformatics/btr686

By:

Marco, Antonio;
Griffiths-Jones, Sam

Publication type:

Article

GenomeRunner: automating genome exploration.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 419, doi. 10.1093/bioinformatics/btr666

By:

Dozmorov, Mikhail G.;
Cara, Lukas R.;
Giles, Cory B.;
Wren, Jonathan D.

Publication type:

Article

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 448, doi. 10.1093/bioinformatics/btr662

By:

Wimalaratne, Sarala M.;
Grenon, Pierre;
Hoehndorf, Robert;
Gkoutos, Georgios V.;
de Bono, Bernard

Publication type:

Article

M3: an improved SNP calling algorithm for Illumina BeadArray data.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 358, doi. 10.1093/bioinformatics/btr673

By:

Li, Gengxin;
Gelernter, Joel;
Kranzler, Henry R.;
Zhao, Hongyu

Publication type:

Article

Inhibition of HIV-1 protease: the rigidity perspective.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 350, doi. 10.1093/bioinformatics/btr683

By:

Heal, J. W.;
Jimenez-Roldan, J. E.;
Wells, S. A.;
Freedman, R. B.;
Römer, R. A.

Publication type:

Article

Minimal cut sets in a metabolic network are elementary modes in a dual network.

Published in:

Bioinformatics, 2012, v. 28, n. 3, p. 381, doi. 10.1093/bioinformatics/btr674

By:

Ballerstein, Kathrin;
von Kamp, Axel;
Klamt, Steffen;
Haus, Utz-Uwe

Publication type:

Article