Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 23

Results: 29

Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3034, doi. 10.1093/bioinformatics/bts574

By:

Mendes, Nuno D.;
Heyne, Steffen;
Freitas, Ana T.;
Sagot, Marie-France;
Backofen, Rolf

Publication type:

Article

MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3155, doi. 10.1093/bioinformatics/bts584

By:

Fange, David;
Mahmutovic, Anel;
Elf, Johan

Publication type:

Article

Global network alignment using multiscale spectral signatures.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3105, doi. 10.1093/bioinformatics/bts592

By:

Patro, Rob;
Kingsford, Carl

Publication type:

Article

Predicting pseudoknotted structures across two RNA sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3058, doi. 10.1093/bioinformatics/bts575

By:

Sperschneider, Jana;
Datta, Amitava;
Wise, Michael J.

Publication type:

Article

Creating reusable tools from scripts: the Galaxy Tool Factory.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3139

By:

Lazarus, Ross;
Kaspi, Antony;
Ziemann, Mark

Publication type:

Article

Network-based inference from complex proteomic mixtures using SNIPE.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3115, doi. 10.1093/bioinformatics/bts594

By:

Nusinow, David P.;
Kiezun, Adam;
O’Connell, Daniel J.;
Chick, Joel M.;
Yue, Yingzi;
Maas, Richard L.;
Gygi, Steven P.;
Sunyaev, Shamil R.

Publication type:

Article

KGBassembler: a karyotype-based genome assembler for Brassicaceae species.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3141

By:

Ma, Chuang;
Chen, Hao;
Xin, Mingming;
Yang, Ruolin;
Wang, Xiangfeng

Publication type:

Article

CD-HIT: accelerated for clustering the next-generation sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3150, doi. 10.1093/bioinformatics/bts565

By:

Fu, Limin;
Niu, Beifang;
Zhu, Zhengwei;
Wu, Sitao;
Li, Weizhong

Publication type:

Article

SCALCE: boosting sequence compression algorithms using locally consistent encoding.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3051, doi. 10.1093/bioinformatics/bts593

By:

Hach, Faraz;
Numanagić, Ibrahim;
Alkan, Can;
Sahinalp, S Cenk

Publication type:

Article

HiCNorm: removing biases in Hi-C data via Poisson regression.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3131, doi. 10.1093/bioinformatics/bts570

By:

Hu, Ming;
Deng, Ke;
Selvaraj, Siddarth;
Qin, Zhaohui;
Ren, Bing;
Liu, Jun S.

Publication type:

Article

Multinomial modeling and an evaluation of common data-mining algorithms for identifying signals of disproportionate reporting in pharmacovigilance databases.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3123, doi. 10.1093/bioinformatics/bts576

By:

Johnson, Kjell;
Guo, Cen;
Gosink, Mark;
Wang, Vicky;
Hauben, Manfred

Publication type:

Article

Predicting protein residue–residue contacts using deep networks and boosting.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3066, doi. 10.1093/bioinformatics/bts598

By:

Eickholt, Jesse;
Cheng, Jianlin

Publication type:

Article

An unbiased evaluation of gene prioritization tools.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3081

By:

Börnigen, Daniela;
Tranchevent, Léon-Charles;
Bonachela-Capdevila, Francisco;
Devriendt, Koenraad;
De Moor, Bart;
De Causmaecker, Patrick;
Moreau, Yves

Publication type:

Article

‘Location, Location, Location’: a spatial approach for rare variant analysis and an application to a study on non-syndromic cleft lip with or without cleft palate.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3027, doi. 10.1093/bioinformatics/bts568

By:

Fier, Heide;
Won, Sungho;
Prokopenko, Dmitry;
AlChawa, Taofik;
Ludwig, Kerstin U.;
Fimmers, Rolf;
Silverman, Edwin K.;
Pagano, Marcello;
Mangold, Elisabeth;
Lange, Christoph

Publication type:

Article

miR-EdiTar: a database of predicted A-to-I edited miRNA target sites.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3166

By:

Laganà, Alessandro;
Paone, Alessio;
Veneziano, Dario;
Cascione, Luciano;
Gasparini, Pierluigi;
Carasi, Stefania;
Russo, Francesco;
Nigita, Giovanni;
Macca, Valentina;
Giugno, Rosalba;
Pulvirenti, Alfredo;
Shasha, Dennis;
Ferro, Alfredo;
Croce, Carlo M.

Publication type:

Article

Robust design of microbial strains.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3097, doi. 10.1093/bioinformatics/bts590

By:

Costanza, Jole;
Carapezza, Giovanni;
Angione, Claudio;
Lió, Pietro;
Nicosia, Giuseppe

Publication type:

Article

Advanced Complex Trait Analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3134, doi. 10.1093/bioinformatics/bts571

By:

Gray, A.;
Stewart, I.;
Tenesa, A.

Publication type:

Article

ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3147, doi. 10.1093/bioinformatics/bts587

By:

Chen, Chong-Jian;
Servant, Nicolas;
Toedling, Joern;
Sarazin, Alexis;
Marchais, Antonin;
Duvernois-Berthet, Evelyne;
Cognat, Valérie;
Colot, Vincent;
Voinnet, Olivier;
Heard, Edith;
Ciaudo, Constance;
Barillot, Emmanuel

Publication type:

Article

KASpOD—a web service for highly specific and explorative oligonucleotide design.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3161, doi. 10.1093/bioinformatics/bts597

By:

Parisot, Nicolas;
Denonfoux, Jérémie;
Dugat-Bony, Eric;
Peyret, Pierre;
Peyretaillade, Eric

Publication type:

Article

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3042, doi. 10.1093/bioinformatics/bts582

By:

Gascoigne, Dennis K.;
Cheetham, Seth W.;
Cattenoz, Pierre B.;
Clark, Michael B.;
Amaral, Paulo P.;
Taft, Ryan J.;
Wilhelm, Dagmar;
Dinger, Marcel E.;
Mattick, John S.

Publication type:

Article

SemMedDB: a PubMed-scale repository of biomedical semantic predications.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3158, doi. 10.1093/bioinformatics/bts591

By:

Kilicoglu, Halil;
Shin, Dongwook;
Fiszman, Marcelo;
Rosemblat, Graciela;
Rindflesch, Thomas C.

Publication type:

Article

Gene set analysis for self-contained tests: complex null and specific alternative hypotheses.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3073, doi. 10.1093/bioinformatics/bts579

By:

Rahmatallah, Y.;
Emmert-Streib, F.;
Glazko, G.

Publication type:

Article

Optimal design of stimulus experiments for robust discrimination of biochemical reaction networks.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3089, doi. 10.1093/bioinformatics/bts585

By:

Flassig, R. J.;
Sundmacher, K.

Publication type:

Article

FeatureStack: Perl module for comparative visualization of gene features.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3137, doi. 10.1093/bioinformatics/bts572

By:

Frech, Christian;
Choo, Caleb;
Chen, Nansheng

Publication type:

Article

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3163, doi. 10.1093/bioinformatics/bts577

By:

Smith, Richard N.;
Aleksic, Jelena;
Butano, Daniela;
Carr, Adrian;
Contrino, Sergio;
Hu, Fengyuan;
Lyne, Mike;
Lyne, Rachel;
Kalderimis, Alex;
Rutherford, Kim;
Stepan, Radek;
Sullivan, Julie;
Wakeling, Matthew;
Watkins, Xavier;
Micklem, Gos

Publication type:

Article

Adding unaligned sequences into an existing alignment using MAFFT and LAST.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3144, doi. 10.1093/bioinformatics/bts578

By:

Katoh, Kazutaka;
Frith, Martin C.

Publication type:

Article

Pathway-based visualization of cross-platform microarray datasets.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3021, doi. 10.1093/bioinformatics/bts583

By:

Wrzodek, Clemens;
Eichner, Johannes;
Zell, Andreas

Publication type:

Article

Site identification in high-throughput RNA–protein interaction data.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3013, doi. 10.1093/bioinformatics/bts569

By:

Uren, Philip J.;
Bahrami-Samani, Emad;
Burns, Suzanne C.;
Qiao, Mei;
Karginov, Fedor V.;
Hodges, Emily;
Hannon, Gregory J.;
Sanford, Jeremy R.;
Penalva, Luiz O. F.;
Smith, Andrew D.

Publication type:

Article

fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays.

Published in:

Bioinformatics, 2012, v. 28, n. 23, p. 3153, doi. 10.1093/bioinformatics/bts588

By:

McCall, Matthew N.;
Jaffee, Harris A.;
Irizarry, Rafael A.

Publication type:

Article