Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 21

Results: 25

Interaction-based feature selection and classification for high-dimensional biological data.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2834, doi. 10.1093/bioinformatics/bts531

By:

Wang, Haitian;
Lo, Shaw-Hwa;
Zheng, Tian;
Hu, Inchi

Publication type:

Article

JEnsembl: a version-aware Java API to Ensembl data systems.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2724, doi. 10.1093/bioinformatics/bts525

By:

Paterson, Trevor;
Law, Andy

Publication type:

Article

Genome-wide in silico prediction of gene expression.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2789, doi. 10.1093/bioinformatics/bts529

By:

McLeay, Robert C.;
Lesluyes, Tom;
Cuellar Partida, Gabriel;
Bailey, Timothy L.

Publication type:

Article

Performance reproducibility index for classification.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2824, doi. 10.1093/bioinformatics/bts509

By:

Yousefi, Mohammadmahdi R.;
Dougherty, Edward R.

Publication type:

Article

HighSSR: high-throughput SSR characterization and locus development from next-gen sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2797, doi. 10.1093/bioinformatics/bts524

By:

Churbanov, Alexander;
Ryan, Rachael;
Hasan, Nabeeh;
Bailey, Donovan;
Chen, Haofeng;
Milligan, Brook;
Houde, Peter

Publication type:

Article

The GlycomeAtlas tool for visualizing and querying glycome data.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2849, doi. 10.1093/bioinformatics/bts516

By:

Konishi, Yoshitsugu;
Aoki-Kinoshita, Kiyoko F.

Publication type:

Article

Updating annotations with the distributed annotation system and the automated sequence annotation pipeline.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2858, doi. 10.1093/bioinformatics/bts530

By:

Speier, William;
Ochs, Michael F.

Publication type:

Article

Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2732, doi. 10.1093/bioinformatics/bts482

By:

Chong, Zechen;
Ruan, Jue;
Wu, Chung-I.

Publication type:

Article

Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2763

By:

Xu, Qifang;
Dunbrack, Roland L.

Publication type:

Article

Statistical challenges associated with detecting copy number variations with next-generation sequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2711, doi. 10.1093/bioinformatics/bts535

By:

Teo, Shu Mei;
Pawitan, Yudi;
Ku, Chee Seng;
Chia, Kee Seng;
Salim, Agus

Publication type:

Article

Optimal timepoint sampling in high-throughput gene expression experiments.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2773, doi. 10.1093/bioinformatics/bts511

By:

Rosa, Bruce A.;
Zhang, Ji;
Major, Ian T.;
Qin, Wensheng;
Chen, Jin

Publication type:

Article

Causal stability ranking.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2819, doi. 10.1093/bioinformatics/bts523

By:

Stekhoven, Daniel J.;
Moraes, Izabel;
Sveinbjörnsson, Gardar;
Hennig, Lars;
Maathuis, Marloes H.;
Bühlmann, Peter

Publication type:

Article

Exploring spatial patterns of gene expression from Fruit Fly embryogenesis on the iPhone.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2847, doi. 10.1093/bioinformatics/bts518

By:

Kumar, Sudhir;
Boccia, Kelly;
McCutchan, Michael;
Ye, Jieping

Publication type:

Article

FSelector: a Ruby gem for feature selection.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2851, doi. 10.1093/bioinformatics/bts528

By:

Cheng, Tiejun;
Wang, Yanli;
Bryant, Stephen H.

Publication type:

Article

RIsearch: fast RNA–RNA interaction search using a simplified nearest-neighbor energy model.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2738, doi. 10.1093/bioinformatics/bts519

By:

Wenzel, Anne;
Akbaşli, Erdinç;
Gorodkin, Jan

Publication type:

Article

Bayesian Inference of Signaling Network Topology in a Cancer Cell Line.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2804, doi. 10.1093/bioinformatics/bts514

By:

Hill, Steven M.;
Lu, Yiling;
Molina, Jennifer;
Heiser, Laura M.;
Spellman, Paul T.;
Speed, Terence P.;
Gray, Joe W.;
Mills, Gordon B.;
Mukherjee, Sach

Publication type:

Article

MaConDa: a publicly accessible mass spectrometry contaminants database.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2856, doi. 10.1093/bioinformatics/bts527

By:

Weber, Ralf J. M.;
Li, Eva;
Bruty, Jonathan;
He, Shan;
Viant, Mark R.

Publication type:

Article

HiTC: exploration of high-throughput ‘C’ experiments.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2843, doi. 10.1093/bioinformatics/bts521

By:

Servant, Nicolas;
Lajoie, Bryan R.;
Nora, Elphège P.;
Giorgetti, Luca;
Chen, Chong-Jian;
Heard, Edith;
Dekker, Job;
Barillot, Emmanuel

Publication type:

Article

HSPIR: a manually annotated heat shock protein information resource.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2853, doi. 10.1093/bioinformatics/bts520

By:

R., Ratheesh Kumar;
N. S., Nagarajan;
S. P., Arunraj;
Sinha, Devanjan;
Veedin Rajan, Vinoth Babu;
Esthaki, Vinoth Kumar;
D’Silva, Patrick

Publication type:

Article

Information-theoretic analysis and prediction of protein atomic burials: on the search for an informational intermediate between sequence and structure.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2755, doi. 10.1093/bioinformatics/bts512

By:

Rocha, Juliana R.;
van der Linden, Marx G.;
Ferreira, Diogo C.;
Azevêdo, Paulo H.;
Pereira de Araújo, Antônio F.

Publication type:

Article

Pythoscape: a framework for generation of large protein similarity networks.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2845, doi. 10.1093/bioinformatics/bts532

By:

Barber, Alan E.;
Babbitt, Patricia C.

Publication type:

Article

A robust model for read count data in exome sequencing experiments and implications for copy number variant calling.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2747, doi. 10.1093/bioinformatics/bts526

By:

Plagnol, Vincent;
Curtis, James;
Epstein, Michael;
Mok, Kin Y.;
Stebbings, Emma;
Grigoriadou, Sofia;
Wood, Nicholas W.;
Hambleton, Sophie;
Burns, Siobhan O.;
Thrasher, Adrian J.;
Kumararatne, Dinakantha;
Doffinger, Rainer;
Nejentsev, Sergey

Publication type:

Article

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2782, doi. 10.1093/bioinformatics/bts515

By:

Feng, Jianxing;
Meyer, Clifford A.;
Wang, Qian;
Liu, Jun S.;
Shirley Liu, X.;
Zhang, Yong

Publication type:

Article

Antisense transcription is coupled to nucleosome occupancy in sense promoters.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2719, doi. 10.1093/bioinformatics/bts534

By:

Dai, Zhiming;
Dai, Xianhua

Publication type:

Article

Static network structure can be used to model the phenotypic effects of perturbations in regulatory networks.

Published in:

Bioinformatics, 2012, v. 28, n. 21, p. 2811, doi. 10.1093/bioinformatics/bts517

By:

Feiglin, Ariel;
Hacohen, Adar;
Sarusi, Avital;
Fisher, Jasmin;
Unger, Ron;
Ofran, Yanay

Publication type:

Article