Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 20

Results: 29

EuGene: maximizing synthetic gene design for heterologous expression.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2683, doi. 10.1093/bioinformatics/bts465

By:

Gaspar, Paulo;
Oliveira, José Luís;
Frommlet, Jörg;
Santos, Manuel A.S.;
Moura, Gabriela

Publication type:

Article

treePL: divergence time estimation using penalized likelihood for large phylogenies.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2689, doi. 10.1093/bioinformatics/bts492

By:

Smith, Stephen A.;
O’Meara, Brian C.

Publication type:

Article

Application of asymmetric statistical potentials to antibody–protein docking.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2608, doi. 10.1093/bioinformatics/bts493

By:

Brenke, Ryan;
Hall, David R.;
Chuang, Gwo-Yu;
Comeau, Stephen R.;
Bohnuud, Tanggis;
Beglov, Dmitri;
Schueler-Furman, Ora;
Vajda, Sandor;
Kozakov, Dima

Publication type:

Article

Impact of ontology evolution on functional analyses.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2671, doi. 10.1093/bioinformatics/bts498

By:

Groß, Anika;
Hartung, Michael;
Prüfer, Kay;
Kelso, Janet;
Rahm, Erhard

Publication type:

Article

RazerS 3: Faster, fully sensitive read mapping.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2592, doi. 10.1093/bioinformatics/bts505

By:

Weese, David;
Holtgrewe, Manuel;
Reinert, Knut

Publication type:

Article

A robust approach to extract biomedical events from literature.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2654, doi. 10.1093/bioinformatics/bts487

By:

Bui, Quoc-Chinh;
Sloot, Peter M.A.

Publication type:

Article

PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2576, doi. 10.1093/bioinformatics/bts484

By:

Jiang, Yue;
Wang, Yadong;
Brudno, Michael

Publication type:

Article

SimRare: a program to generate and analyze sequence-based data for association studies of quantitative and qualitative traits.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2703

By:

Li, Biao;
Wang, Gao;
Leal, Suzanne M.

Publication type:

Article

FACETS: multi-faceted functional decomposition of protein interaction networks.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2624, doi. 10.1093/bioinformatics/bts469

By:

Seah, Boon-Siew;
Bhowmick, Sourav S.;
Forbes Dewey, C.

Publication type:

Article

An integrated approach to reduce the impact of minor allele frequency and linkage disequilibrium on variable importance measures for genome-wide data.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2615, doi. 10.1093/bioinformatics/bts483

By:

Walters, Raymond;
Laurin, Charles;
Lubke, Gitta H.

Publication type:

Article

COMPADRE: an R and web resource for pathway activity analysis by component decompositions.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2701, doi. 10.1093/bioinformatics/bts513

By:

Ramos-Rodriguez, Roberto-Rafael;
Cuevas-Diaz-Duran, Raquel;
Falciani, Francesco;
Tamez-Peña, Jose-Gerardo;
Trevino, Victor

Publication type:

Article

SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2600, doi. 10.1093/bioinformatics/bts489

By:

Moal, Iain H.;
Fernández-Recio, Juan

Publication type:

Article

Identification of trans-acting siRNAs and their regulatory cascades in grapevine.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2561, doi. 10.1093/bioinformatics/bts500

By:

Zhang, Changqing;
Li, Guangping;
Wang, Jin;
Fang, Jinggui

Publication type:

Article

Systematic comparison of RNA-Seq normalization methods using measurement error models.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2584, doi. 10.1093/bioinformatics/bts497

By:

Sun, Zhaonan;
Zhu, Yu

Publication type:

Article

shortran: a pipeline for small RNA-seq data analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2698, doi. 10.1093/bioinformatics/bts496

By:

Gupta, Vikas;
Markmann, Katharina;
Pedersen, Christian N. S.;
Stougaard, Jens;
Andersen, Stig U.

Publication type:

Article

MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2685, doi. 10.1093/bioinformatics/bts507

By:

Kumar, Sudhir;
Stecher, Glen;
Peterson, Daniel;
Tamura, Koichiro

Publication type:

Article

MetiTree: a web application to organize and process high-resolution multi-stage mass spectrometry metabolomics data.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2707, doi. 10.1093/bioinformatics/bts486

By:

Rojas-Chertó, Miguel;
van Vliet, Michael;
Peironcely, Julio E.;
van Doorn, Ronnie;
Kooyman, Maarten;
te Beek, Tim;
van Driel, Marc A.;
Hankemeier, Thomas;
Reijmers, Theo

Publication type:

Article

TRFolder-W: a web server for telomerase RNA structure prediction in yeast genomes.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2696, doi. 10.1093/bioinformatics/bts506

By:

Zhang, Dong;
Xue, Xingran;
Malmberg, Russell L.;
Cai, Liming

Publication type:

Article

PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2691, doi. 10.1093/bioinformatics/bts488

By:

Sükösd, Zsuzsanna;
Knudsen, Bjarne;
Kjems, Jørgen;
Pedersen, Christian N.S.

Publication type:

Article

An empirical Bayes mixture model for SNP detection in pooled sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2569, doi. 10.1093/bioinformatics/bts501

By:

Zhou, Baiyu

Publication type:

Article

Positive-unlabeled learning for disease gene identification.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2640, doi. 10.1093/bioinformatics/bts504

By:

Yang, Peng;
Li, Xiao-Li;
Mei, Jian-Ping;
Kwoh, Chee-Keong;
Ng, See-Kiong

Publication type:

Article

Quantifying uniformity of mapped reads.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2680, doi. 10.1093/bioinformatics/bts451

By:

Hower, Valerie;
Starfield, Richard;
Roberts, Adam;
Pachter, Lior

Publication type:

Article

FacPad: Bayesian sparse factor modeling for the inference of pathways responsive to drug treatment.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2662, doi. 10.1093/bioinformatics/bts502

By:

Ma, Haisu;
Zhao, Hongyu

Publication type:

Article

BioJava: an open-source framework for bioinformatics in 2012.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2693, doi. 10.1093/bioinformatics/bts494

By:

Prlić, Andreas;
Yates, Andrew;
Bliven, Spencer E.;
Rose, Peter W.;
Jacobsen, Julius;
Troshin, Peter V.;
Chapman, Mark;
Gao, Jianjiong;
Koh, Chuan Hock;
Foisy, Sylvain;
Holland, Richard;
Rimša, Gediminas;
Heuer, Michael L.;
Brandstätter–Müller, H.;
Bourne, Philip E.;
Willis, Scooter

Publication type:

Article

Intensity quantile estimation and mapping—a novel algorithm for the correction of image non-uniformity bias in HCS data.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2632, doi. 10.1093/bioinformatics/bts491

By:

Lo, Ernest;
Soleilhac, Emmanuelle;
Martinez, Anne;
Lafanechère, Laurence;
Nadon, Robert

Publication type:

Article

Qualitative translation of relations from BioPAX to SBML qual.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2648, doi. 10.1093/bioinformatics/bts508

By:

Büchel, Finja;
Wrzodek, Clemens;
Mittag, Florian;
Dräger, Andreas;
Eichner, Johannes;
Rodriguez, Nicolas;
Le Novère, Nicolas;
Zell, Andreas

Publication type:

Article

BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2705, doi. 10.1093/bioinformatics/bts422

By:

Aïchaoui, Leslie;
Jules, Matthieu;
Le Chat, Ludovic;
Aymerich, Stéphane;
Fromion, Vincent;
Goelzer, Anne

Publication type:

Article

EFICAz2.5: application of a high-precision enzyme function predictor to 396 proteomes.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2687, doi. 10.1093/bioinformatics/bts510

By:

Kumar, Narendra;
Skolnick, Jeffrey

Publication type:

Article

Qualimap: evaluating next-generation sequencing alignment data.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2678

By:

García-Alcalde, Fernando;
Okonechnikov, Konstantin;
Carbonell, José;
Cruz, Luis M.;
Götz, Stefan;
Tarazona, Sonia;
Dopazo, Joaquín;
Meyer, Thomas F.;
Conesa, Ana

Publication type:

Article