Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 2

Results: 28

BadiRate: estimating family turnover rates by likelihood-based methods.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 279, doi. 10.1093/bioinformatics/btr623

By:

Librado, P.;
Vieira, F. G.;
Rozas, J.

Publication type:

Article

A novel and versatile computational tool to model translation.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 292, doi. 10.1093/bioinformatics/btr650

By:

Chu, Dominique;
Zabet, Nicolae;
von der Haar, Tobias

Publication type:

Article

GenomicTools: a computational platform for developing high-throughput analytics in genomics.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 282, doi. 10.1093/bioinformatics/btr646

By:

Tsirigos, Aristotelis;
Haiminen, Niina;
Bilal, Erhan;
Utro, Filippo

Publication type:

Article

Discovering transcription factor regulatory targets using gene expression and binding data.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 206, doi. 10.1093/bioinformatics/btr628

By:

Maienschein-Cline, Mark;
Zhou, Jie;
White, Kevin P.;
Sciammas, Roger;
Dinner, Aaron R.

Publication type:

Article

FTSite: high accuracy detection of ligand binding sites on unbound protein structures.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 286, doi. 10.1093/bioinformatics/btr651

By:

Ngan, Chi-Ho;
Hall, David R.;
Zerbe, Brandon;
Grove, Laurie E.;
Kozakov, Dima;
Vajda, Sandor

Publication type:

Article

Identifying quantitative trait loci via group-sparse multitask regression and feature selection: an imaging genetics study of the ADNI cohort.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 229, doi. 10.1093/bioinformatics/btr649

By:

Wang, Hua;
Nie, Feiping;
Huang, Heng;
Kim, Sungeun;
Nho, Kwangsik;
Risacher, Shannon L.;
Saykin, Andrew J.;
Shen, Li

Publication type:

Article

Fast computation of minimum hybridization networks.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 191, doi. 10.1093/bioinformatics/btr618

By:

Albrecht, Benjamin;
Scornavacca, Celine;
Cenci, Alberto;
Huson, Daniel H.

Publication type:

Article

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 298, doi. 10.1093/bioinformatics/btr642

By:

Lischer, H. E. L.;
Excoffier, L.

Publication type:

Article

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 167, doi. 10.1093/bioinformatics/btr629

By:

Ding, Jiarui;
Bashashati, Ali;
Roth, Andrew;
Oloumi, Arusha;
Tse, Kane;
Zeng, Thomas;
Haffari, Gholamreza;
Hirst, Martin;
Marra, Marco A.;
Condon, Anne;
Aparicio, Samuel;
Shah, Sohrab P.

Publication type:

Article

Identification of context-specific gene regulatory networks with GEMULA—gene expression modeling using LAsso.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 214, doi. 10.1093/bioinformatics/btr641

By:

Geeven, Geert;
van Kesteren, Ronald E.;
Smit, August B.;
de Gunst, Mathisca C. M.

Publication type:

Article

MetalionRNA: computational predictor of metal-binding sites in RNA structures.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 198, doi. 10.1093/bioinformatics/btr636

By:

Philips, Anna;
Milanowska, Kaja;
Lach, Grzegorz;
Boniecki, Michal;
Rother, Kristian;
Bujnicki, Janusz M.

Publication type:

Article

Modelling time course gene expression data with finite mixtures of linear additive models.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 222, doi. 10.1093/bioinformatics/btr653

By:

Grün, Bettina;
Scharl, Theresa;
Leisch, Friedrich

Publication type:

Article

MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 288, doi. 10.1093/bioinformatics/btr645

By:

Gatto, Laurent;
Lilley, Kathryn S.

Publication type:

Article

Addendum: topology and prediction of RNA pseudoknots.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 300, doi. 10.1093/bioinformatics/btr643

By:

Reidys, Christian M.;
Huang, Fenix W. D.;
Andersen, Jørgen E.;
Penner, Robert C.;
Stadler, Peter F.;
Nebel, Markus E.

Publication type:

Article

Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 246, doi. 10.1093/bioinformatics/btr634

By:

Caldas, José;
Gehlenborg, Nils;
Kettunen, Eeva;
Faisal, Ali;
Rönty, Mikko;
Nicholson, Andrew G.;
Knuutila, Sakari;
Brazma, Alvis;
Kaski, Samuel

Publication type:

Article

Computing graphlet signatures of network nodes and motifs in Cytoscape with GraphletCounter.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 290, doi. 10.1093/bioinformatics/btr637

By:

Whelan, Christopher;
Sönmez, Kemal

Publication type:

Article

NoRSE: noise reduction and state evaluator for high-frequency single event traces.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 296, doi. 10.1093/bioinformatics/btr632

By:

Reuel, Nigel F.;
Bojo, Peter;
Zhang, Jingqing;
Boghossian, Ardemis A.;
Ahn, Jin-Ho;
Kim, Jong−Ho;
Strano, Michael S.

Publication type:

Article

Which species is it? Species-driven gene name disambiguation using random walks over a mixture of adjacency matrices.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 254, doi. 10.1093/bioinformatics/btr640

By:

Harmston, Nathan;
Filsell, Wendy;
Stumpf, Michael P. H.

Publication type:

Article

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 184, doi. 10.1093/bioinformatics/btr638

By:

Jones, David T.;
Buchan, Daniel W. A.;
Cozzetto, Domenico;
Pontil, Massimiliano

Publication type:

Article

FSR: feature set reduction for scalable and accurate multi-class cancer subtype classification based on copy number.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 151, doi. 10.1093/bioinformatics/btr644

By:

Wong, Gerard;
Leckie, Christopher;
Kowalczyk, Adam

Publication type:

Article

Inferring sequence regions under functional divergence in duplicate genes.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 176, doi. 10.1093/bioinformatics/btr635

By:

Huang, Yi-Fei;
Golding, G. Brian

Publication type:

Article

Wavelet-based image fusion in multi-view three-dimensional microscopy.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 238, doi. 10.1093/bioinformatics/btr609

By:

Rubio-Guivernau, Jose L.;
Gurchenkov, Vasily;
Luengo-Oroz, Miguel A.;
Duloquin, Louise;
Bourgine, Paul;
Santos, Andres;
Peyrieras, Nadine;
Ledesma-Carbayo, Maria J.

Publication type:

Article

NARWHAL, a primary analysis pipeline for NGS data.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 284, doi. 10.1093/bioinformatics/btr613

By:

Brouwer, R. W. W.;
van den Hout, M. C. G. N.;
Grosveld, F. G.;
van IJcken, W. F. J.

Publication type:

Article

Gene set analysis in the cloud.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 294, doi. 10.1093/bioinformatics/btr630

By:

Zhang, Lu;
Gu, Shengchang;
Liu, Yuan;
Wang, Bingqiang;
Azuaje, Francisco

Publication type:

Article

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 277, doi. 10.1093/bioinformatics/btr612

By:

Asmann, Yan W.;
Middha, Sumit;
Hossain, Asif;
Baheti, Saurabh;
Li, Ying;
Chai, High-Seng;
Sun, Zhifu;
Duffy, Patrick H.;
Hadad, Ahmed A.;
Nair, Asha;
Liu, Xiaoyu;
Zhang, Yuji;
Klee, Eric W.;
Kalari, Krishna R.;
Kocher, Jean-Pierre A.

Publication type:

Article

Novel search method for the discovery of functional relationships.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 269, doi. 10.1093/bioinformatics/btr631

By:

Ramírez, Fidel;
Lawyer, Glenn;
Albrecht, Mario

Publication type:

Article

A novel specific edge effect correction method for RNA interference screenings.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 261, doi. 10.1093/bioinformatics/btr648

By:

Carralot, Jean-Philippe;
Ogier, Arnaud;
Boese, Annette;
Genovesio, Auguste;
Brodin, Priscille;
Sommer, Peter;
Dorval, Thierry

Publication type:

Article

Using Sybil for interactive comparative genomics of microbes on the web.

Published in:

Bioinformatics, 2012, v. 28, n. 2, p. 160, doi. 10.1093/bioinformatics/btr652

By:

Riley, David R.;
Angiuoli, Samuel V.;
Crabtree, Jonathan;
Dunning Hotopp, Julie C.;
Tettelin, Hervé

Publication type:

Article