Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 19

Results: 32

An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2534, doi. 10.1093/bioinformatics/bts485

By:

Wang, Xingbin;
Kang, Dongwan D.;
Shen, Kui;
Song, Chi;
Lu, Shuya;
Chang, Lun-Ching;
Liao, Serena G.;
Huo, Zhiguang;
Tang, Shaowu;
Ding, Ying;
Kaminski, Naftali;
Sibille, Etienne;
Lin, Yan;
Li, Jia;
Tseng, George C.

Publication type:

Article

Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2407, doi. 10.1093/bioinformatics/bts464

By:

Zhang, Dapeng;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

YAHA: fast and flexible long-read alignment with optimal breakpoint detection.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2417, doi. 10.1093/bioinformatics/bts456

By:

Faust, Gregory G.;
Hall, Ira M.

Publication type:

Article

Snakemake—a scalable bioinformatics workflow engine.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2520, doi. 10.1093/bioinformatics/bts480

By:

Köster, Johannes;
Rahmann, Sven

Publication type:

Article

Ancestral haplotype-based association mapping with generalized linear mixed models accounting for stratification.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2467, doi. 10.1093/bioinformatics/bts348

By:

Zhang, Z.;
Guillaume, F.;
Sartelet, A.;
Charlier, C.;
Georges, M.;
Farnir, F.;
Druet, T.

Publication type:

Article

Bayesian ontology querying for accurate and noise-tolerant semantic searches.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2502, doi. 10.1093/bioinformatics/bts471

By:

Bauer, Sebastian;
Köhler, Sebastian;
Schulz, Marcel H.;
Robinson, Peter N.

Publication type:

Article

easyRNASeq: a bioconductor package for processing RNA-Seq data.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2532, doi. 10.1093/bioinformatics/bts477

By:

Delhomme, Nicolas;
Padioleau, Ismaël;
Furlong, Eileen E.;
Steinmetz, Lars M.

Publication type:

Article

RedoxDB—a curated database for experimentally verified protein oxidative modification.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2551, doi. 10.1093/bioinformatics/bts468

By:

Sun, Ming-an;
Wang, Yejun;
Cheng, Han;
Zhang, Qing;
Ge, Wei;
Guo, Dianjing

Publication type:

Article

Measuring and comparing structural fluctuation patterns in large protein datasets.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2431, doi. 10.1093/bioinformatics/bts445

By:

Fuglebakk, Edvin;
Echave, Julián;
Reuter, Nathalie

Publication type:

Article

Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2441, doi. 10.1093/bioinformatics/bts472

By:

Bacardit, Jaume;
Widera, Paweł;
Márquez-Chamorro, Alfonso;
Divina, Federico;
Aguilar-Ruiz, Jesús S.;
Krasnogor, Natalio

Publication type:

Article

MolBioLib: a C++11 framework for rapid development and deployment of bioinformatics tasks.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2412, doi. 10.1093/bioinformatics/bts458

By:

Ohsumi, Toshiro K.;
Borowsky, Mark L.

Publication type:

Article

RILogo: visualizing RNA–RNA interactions.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2523, doi. 10.1093/bioinformatics/bts461

By:

Menzel, Peter;
Seemann, Stefan E.;
Gorodkin, Jan

Publication type:

Article

DELIMINATE—a fast and efficient method for loss-less compression of genomic sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2527, doi. 10.1093/bioinformatics/bts467

By:

Mohammed, Monzoorul Haque;
Dutta, Anirban;
Bose, Tungadri;
Chadaram, Sudha;
Mande, Sharmila S.

Publication type:

Article

A MATLAB toolbox for structural kinetic modeling.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2546, doi. 10.1093/bioinformatics/bts473

By:

Girbig, Dorothee;
Selbig, Joachim;
Grimbs, Sergio

Publication type:

Article

Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2493

By:

Su, Xiaoquan;
Xu, Jian;
Ning, Kang

Publication type:

Article

Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2540, doi. 10.1093/bioinformatics/bts474

By:

Lee, S.H.;
Yang, J.;
Goddard, M.E.;
Visscher, P.M.;
Wray, N.R.

Publication type:

Article

iBBiG: iterative binary bi-clustering of gene sets.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2484, doi. 10.1093/bioinformatics/bts438

By:

Gusenleitner, Daniel;
Howe, Eleanor A.;
Bentink, Stefan;
Quackenbush, John;
Culhane, Aedín C.

Publication type:

Article

zCall: a rare variant caller for array-based genotyping.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2543, doi. 10.1093/bioinformatics/bts479

By:

Goldstein, Jacqueline I.;
Crenshaw, Andrew;
Carey, Jason;
Grant, George B.;
Maguire, Jared;
Fromer, Menachem;
O’Dushlaine, Colm;
Moran, Jennifer L.;
Chambert, Kimberly;
Stevens, Christine;
Sklar, Pamela;
Hultman, Christina M.;
Purcell, Shaun;
McCarroll, Steven A.;
Sullivan, Patrick F.;
Daly, Mark J.;
Neale, Benjamin M.

Publication type:

Article

Deep architectures for protein contact map prediction.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2449, doi. 10.1093/bioinformatics/bts475

By:

Di Lena, Pietro;
Nagata, Ken;
Baldi, Pierre

Publication type:

Article

NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species.

Published in:

2012

By:

Kreimer, Anat;
Doron-Faigenboim, Adi;
Borenstein, Elhanan;
Freilich, Shiri

Publication type:

Correction Notice

Nebula—a web-server for advanced ChIP-seq data analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2517, doi. 10.1093/bioinformatics/bts463

By:

Boeva, Valentina;
Lermine, Alban;
Barette, Camille;
Guillouf, Christel;
Barillot, Emmanuel

Publication type:

Article

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2537, doi. 10.1093/bioinformatics/bts460

By:

Peakall, Rod;
Smouse, Peter E.

Publication type:

Article

GeneTalk: an expert exchange platform for assessing rare sequence variants in personal genomes.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2515, doi. 10.1093/bioinformatics/bts462

By:

Kamphans, Tom;
Krawitz, Peter M.

Publication type:

Article

TMBB-DB: a transmembrane β-barrel proteome database.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2425, doi. 10.1093/bioinformatics/bts478

By:

Freeman, Thomas C.;
Wimley, William C.

Publication type:

Article

VegaMC: a R/bioconductor package for fast downstream analysis of large array comparative genomic hybridization datasets.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2512, doi. 10.1093/bioinformatics/bts453

By:

Morganella, Sandro;
Ceccarelli, Michele

Publication type:

Article

UniMoG—a unifying framework for genomic distance calculation and sorting based on DCJ.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2509, doi. 10.1093/bioinformatics/bts440

By:

Hilker, Rolf;
Sickinger, Corinna;
Pedersen, Christian N.S.;
Stoye, Jens

Publication type:

Article

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2458

By:

Li, Wenyuan;
Zhang, Shihua;
Liu, Chun-Chi;
Zhou, Xianghong Jasmine

Publication type:

Article

SQID-XLink: implementation of an intensity-incorporated algorithm for cross-linked peptide identification.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2548, doi. 10.1093/bioinformatics/bts442

By:

Li, Wenzhou;
O’Neill, Heather A.;
Wysocki, Vicki H.

Publication type:

Article

Algorithms and complexity of enumerating minimal precursor sets in genome-wide metabolic networks.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2474, doi. 10.1093/bioinformatics/bts423

By:

Acuña, Vicente;
Milreu, Paulo Vieira;
Cottret, Ludovic;
Marchetti-Spaccamela, Alberto;
Stougie, Leen;
Sagot, Marie-France

Publication type:

Article

Folding RNA/DNA hybrid duplexes.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2530, doi. 10.1093/bioinformatics/bts466

By:

Lorenz, Ronny;
Hofacker, Ivo L.;
Bernhart, Stephan H.

Publication type:

Article

GlycoCD: a repository for carbohydrate-related CD antigens.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2553, doi. 10.1093/bioinformatics/bts481

By:

Kumar, Sonu;
Lütteke, Thomas;
Schwartz-Albiez, Reinhard

Publication type:

Article

Paving the future: finding suitable ISMB venues.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2556, doi. 10.1093/bioinformatics/bts420

By:

Rost, Burkhard;
Gaasterland, Terry;
Lengauer, Thomas;
Linial, Michal;
Markel, Scott;
Morrison McKay, B.J.;
Schneider, Reinhard;
Horton, Paul;
Kelso, Janet

Publication type:

Article