Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 18

Results: 71

Multiple instance learning of Calmodulin binding sites.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i416, doi. 10.1093/bioinformatics/bts416

By:

Minhas, Fayyaz ul Amir Afsar;
Ben-Hur, Asa

Publication type:

Article

EnrichNet: network-based gene set enrichment analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i451, doi. 10.1093/bioinformatics/bts389

By:

Glaab, Enrico;
Baudot, Anaïs;
Krasnogor, Natalio;
Schneider, Reinhard;
Valencia, Alfonso

Publication type:

Article

Author Index.

Published in:: Bioinformatics, 2012, v. 28, n. 18, p. i647, doi. 10.1093/bioinformatics/bts795
Publication type:: Article

Targeted retrieval of gene expression measurements using regulatory models.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2349, doi. 10.1093/bioinformatics/bts361

By:

Georgii, Elisabeth;
Salojärvi, Jarkko;
Brosché, Mikael;
Kangasjärvi, Jaakko;
Kaski, Samuel

Publication type:

Article

RIBFIND: a web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM maps.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2391, doi. 10.1093/bioinformatics/bts446

By:

Pandurangan, Arun Prasad;
Topf, Maya

Publication type:

Article

A bioimage informatics approach to automatically extract complex fungal networks.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2374, doi. 10.1093/bioinformatics/bts364

By:

Obara, Boguslaw;
Grau, Vicente;
Fricker, Mark D.

Publication type:

Article

A regression model for estimating DNA copy number applied to capture sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2357, doi. 10.1093/bioinformatics/bts448

By:

Rigaill, Guillem J.;
Cadot, Sidney;
Kluin, Roelof J.C.;
Xue, Zheng;
Bernards, Rene;
Majewski, Ian J.;
Wessels, Lodewyk F.A.

Publication type:

Article

Evolution of gene neighborhoods within reconciled phylogenies.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i382

By:

Bérard, Sèverine;
Gallien, Coralie;
Boussau, Bastien;
Szöllősi, Gergely J.;
Daubin, Vincent;
Tannier, Eric

Publication type:

Article

SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2385, doi. 10.1093/bioinformatics/bts452

By:

Ryan, Michael C.;
Cleland, James;
Kim, RyangGuk;
Wong, Wing Chung;
Weinstein, John N.

Publication type:

Article

Protein domain recurrence and order can enhance prediction of protein functions.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i444, doi. 10.1093/bioinformatics/bts398

By:

Messih, Mario Abdel;
Chitale, Meghana;
Bajic, Vladimir B.;
Kihara, Daisuke;
Gao, Xin

Publication type:

Article

Predicting drug–target interactions from chemical and genomic kernels using Bayesian matrix factorization.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2304, doi. 10.1093/bioinformatics/bts360

By:

Gönen, Mehmet

Publication type:

Article

Nonlinear dimension reduction with Wright–Fisher kernel for genotype aggregation and association mapping.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i375, doi. 10.1093/bioinformatics/bts406

By:

Zhu, Hongjie;
Li, Lexin;
Zhou, Hua

Publication type:

Article

Genomic context analysis reveals dense interaction network between vertebrate ultraconserved non-coding elements.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i395, doi. 10.1093/bioinformatics/bts400

By:

Dimitrieva, Slavica;
Bucher, Philipp

Publication type:

Article

Techniques to cope with missing data in host–pathogen protein interaction prediction.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i466, doi. 10.1093/bioinformatics/bts375

By:

Kshirsagar, Meghana;
Carbonell, Jaime;
Klein-Seetharaman, Judith

Publication type:

Article

Comprehensive estimation of input signals and dynamics in biochemical reaction networks.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i529, doi. 10.1093/bioinformatics/bts393

By:

Schelker, M.;
Raue, A.;
Timmer, J.;
Kreutz, C.

Publication type:

Article

An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i370, doi. 10.1093/bioinformatics/bts379

By:

Coin, Lachlan J.M.;
Cao, Dandan;
Ren, Jingjing;
Zuo, Xianbo;
Sun, Liangdan;
Yang, Sen;
Zhang, Xuejun;
Cui, Yong;
Li, Yingrui;
Jin, Xin;
Wang, Jun

Publication type:

Article

ECCB 2012: The 11th European Conference on Computational Biology.

Published in:

2012

By:

Schwede, Torsten;
Iber, Dagmar

Publication type:

Editorial

Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i409, doi. 10.1093/bioinformatics/bts386

By:

Stolzer, Maureen;
Lai, Han;
Xu, Minli;
Sathaye, Deepa;
Vernot, Benjamin;
Durand, Dannie

Publication type:

Article

Drug target prediction using adverse event report systems: a pharmacogenomic approach.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i611, doi. 10.1093/bioinformatics/bts413

By:

Takarabe, Masataka;
Kotera, Masaaki;
Nishimura, Yosuke;
Goto, Susumu;
Yamanishi, Yoshihiro

Publication type:

Article

PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i640, doi. 10.1093/bioinformatics/bts402

By:

Ng, Sam;
Collisson, Eric A.;
Sokolov, Artem;
Goldstein, Theodore;
Gonzalez-Perez, Abel;
Lopez-Bigas, Nuria;
Benz, Christopher;
Haussler, David;
Stuart, Joshua M.

Publication type:

Article

Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious kd-trees.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i325, doi. 10.1093/bioinformatics/bts380

By:

Mahmud, Md Pavel;
Wiedenhoeft, John;
Schliep, Alexander

Publication type:

Article

SANS: high-throughput retrieval of protein sequences allowing 50% mismatches.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i438, doi. 10.1093/bioinformatics/bts417

By:

Koskinen, J. Patrik;
Holm, Liisa

Publication type:

Article

ANGES: reconstructing ANcestral GEnomeS maps.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2388, doi. 10.1093/bioinformatics/bts457

By:

Jones, Bradley R.;
Rajaraman, Ashok;
Tannier, Eric;
Chauve, Cedric

Publication type:

Article

CySBML: a Cytoscape plugin for SBML.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2402, doi. 10.1093/bioinformatics/bts432

By:

König, Matthias;
Dräger, Andreas;
Holzhütter, Hermann-Georg

Publication type:

Article

Integrating literature-constrained and data-driven inference of signalling networks.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2311, doi. 10.1093/bioinformatics/bts363

By:

Eduati, Federica;
De Las Rivas, Javier;
Di Camillo, Barbara;
Toffolo, Gianna;
Saez-Rodriguez, Julio

Publication type:

Article

Random sampling of elementary flux modes in large-scale metabolic networks.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i515, doi. 10.1093/bioinformatics/bts401

By:

Machado, Daniel;
Soons, Zita;
Patil, Kiran Raosaheb;
Ferreira, Eugénio C.;
Rocha, Isabel

Publication type:

Article

An accurate paired sample test for count data.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i596, doi. 10.1093/bioinformatics/bts394

By:

Pham, Thang V.;
Jimenez, Connie R.

Publication type:

Article

Telescoper: de novo assembly of highly repetitive regions.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i311, doi. 10.1093/bioinformatics/bts399

By:

Bresler, Ma'ayan;
Sheehan, Sara;
Chan, Andrew H.;
Song, Yun S.

Publication type:

Article

LocTree2 predicts localization for all domains of life.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i458, doi. 10.1093/bioinformatics/bts390

By:

Goldberg, Tatyana;
Hamp, Tobias;
Rost, Burkhard

Publication type:

Article

Event extraction across multiple levels of biological organization.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i575, doi. 10.1093/bioinformatics/bts407

By:

Pyysalo, Sampo;
Ohta, Tomoko;
Miwa, Makoto;
Cho, Han-Cheol;
Tsujii, Jun'ichi;
Ananiadou, Sophia

Publication type:

Article

Relating drug–protein interaction network with drug side effects.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i522, doi. 10.1093/bioinformatics/bts383

By:

Mizutani, Sayaka;
Pauwels, Edouard;
Stoven, Véronique;
Goto, Susumu;
Yamanishi, Yoshihiro

Publication type:

Article

Identifying functional modules in interaction networks through overlapping Markov clustering.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i473, doi. 10.1093/bioinformatics/bts370

By:

Shih, Yu-Keng;
Parthasarathy, Srinivasan

Publication type:

Article

Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i502, doi. 10.1093/bioinformatics/bts381

By:

Larhlimi, Abdelhalim;
Basler, Georg;
Grimbs, Sergio;
Selbig, Joachim;
Nikoloski, Zoran

Publication type:

Article

CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2382, doi. 10.1093/bioinformatics/bts443

By:

Li, Pei;
Ji, Guoli;
Dong, Min;
Schmidt, Emily;
Lenox, Douglas;
Chen, Liangliang;
Liu, Qi;
Liu, Lin;
Zhang, Jie;
Liang, Chun

Publication type:

Article

The architecture of the gene regulatory networks of different tissues.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i509, doi. 10.1093/bioinformatics/bts387

By:

Li, Jie;
Hua, Xu;
Haubrock, Martin;
Wang, Jin;
Wingender, Edgar

Publication type:

Article

Accurate estimation of short read mapping quality for next-generation genome sequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i349, doi. 10.1093/bioinformatics/bts408

By:

Ruffalo, Matthew;
Koyutürk, Mehmet;
Ray, Soumya;
LaFramboise, Thomas

Publication type:

Article

Trajectory-oriented Bayesian experiment design versus Fisher A-optimal design: an in depth comparison study.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i535, doi. 10.1093/bioinformatics/bts377

By:

Weber, Patrick;
Kramer, Andrei;
Dingler, Clemens;
Radde, Nicole

Publication type:

Article

ReLiance: a machine learning and literature-based prioritization of receptor—ligand pairings.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i569, doi. 10.1093/bioinformatics/bts391

By:

Iacucci, Ernesto;
Tranchevent, Léon-Charles;
Popovic, Dusan;
Pavlopoulos, Georgios A.;
De Moor, Bart;
Schneider, Reinhard;
Moreau, Yves

Publication type:

Article

MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i356, doi. 10.1093/bioinformatics/bts397

By:

Wang, Yi;
Leung, Henry C.M.;
Yiu, S.M.;
Chin, Francis Y.L.

Publication type:

Article

Decoding properties of tRNA leave a detectable signal in codon usage bias.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i340, doi. 10.1093/bioinformatics/bts403

By:

Roth, Alexander C.

Publication type:

Article

Metabolite identification and molecular fingerprint prediction through machine learning.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2333, doi. 10.1093/bioinformatics/bts437

By:

Heinonen, Markus;
Shen, Huibin;
Zamboni, Nicola;
Rousu, Juho

Publication type:

Article

Cell-Dock: high-performance protein–protein docking.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2394, doi. 10.1093/bioinformatics/bts454

By:

Pons, Carles;
Jiménez-González, Daniel;
González-Álvarez, Cecilia;
Servat, Harald;
Cabrera-Benítez, Daniel;
Aguilar, Xavier;
Fernández-Recio, Juan

Publication type:

Article

Graphlet-based edge clustering reveals pathogen-interacting proteins.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i480, doi. 10.1093/bioinformatics/bts376

By:

Solava, R. W.;
Michaels, R. P.;
Milenković, T.

Publication type:

Article

Imaging, quantification and visualization of spatio-temporal patterning in mESC colonies under different culture conditions.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i556, doi. 10.1093/bioinformatics/bts404

By:

Scherf, N.;
Herberg, M.;
Thierbach, K.;
Zerjatke, T.;
Kalkan, T.;
Humphreys, P.;
Smith, A.;
Glauche, I.;
Roeder, I.

Publication type:

Article

GAPIT: genome association and prediction integrated tool.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2397, doi. 10.1093/bioinformatics/bts444

By:

Lipka, Alexander E.;
Tian, Feng;
Wang, Qishan;
Peiffer, Jason;
Li, Meng;
Bradbury, Peter J.;
Gore, Michael A.;
Buckler, Edward S.;
Zhang, Zhiwu

Publication type:

Article

Long read alignment based on maximal exact match seeds.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i318, doi. 10.1093/bioinformatics/bts414

By:

Liu, Yongchao;
Schmidt, Bertil

Publication type:

Article

Efficient sampling for Bayesian inference of conjunctive Bayesian networks.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. 2318, doi. 10.1093/bioinformatics/bts433

By:

Sakoparnig, Thomas;
Beerenwinkel, Niko

Publication type:

Article

Improving HIV coreceptor usage prediction in the clinic using hints from next-generation sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i589, doi. 10.1093/bioinformatics/bts373

By:

Pfeifer, Nico;
Lengauer, Thomas

Publication type:

Article

Reveal—visual eQTL analytics.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i542, doi. 10.1093/bioinformatics/bts382

By:

Jäger, Günter;
Battke, Florian;
Nieselt, Kay

Publication type:

Article

ECCB 2012 Organization.

Published in:: Bioinformatics, 2012, v. 28, n. 18, p. i306, doi. 10.1093/bioinformatics/bts418
Publication type:: Article