Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 17

Results: 19

VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2267, doi. 10.1093/bioinformatics/bts368

By:

Habegger, Lukas;
Balasubramanian, Suganthi;
Chen, David Z.;
Khurana, Ekta;
Sboner, Andrea;
Harmanci, Arif;
Rozowsky, Joel;
Clarke, Declan;
Snyder, Michael;
Gerstein, Mark

Publication type:

Article

Computational prediction of N-linked glycosylation incorporating structural properties and patterns.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2249, doi. 10.1093/bioinformatics/bts426

By:

Chuang, Gwo-Yu;
Boyington, Jeffrey C.;
Joyce, M. Gordon;
Zhu, Jiang;
Nabel, Gary J.;
Kwong, Peter D.;
Georgiev, Ivelin

Publication type:

Article

MALDIquant: a versatile R package for the analysis of mass spectrometry data.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2270, doi. 10.1093/bioinformatics/bts447

By:

Gibb, Sebastian;
Strimmer, Korbinian

Publication type:

Article

TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2276, doi. 10.1093/bioinformatics/bts424

By:

Klein, Johannes;
Leupold, Stefan;
Biegler, Ilona;
Biedendieck, Rebekka;
Münch, Richard;
Jahn, Dieter

Publication type:

Article

BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2231, doi. 10.1093/bioinformatics/bts303

By:

Takahashi, Hiro;
Takahashi, Anna;
Naito, Satoshi;
Onouchi, Hitoshi

Publication type:

Article

Voronto: mapper for expression data to ontologies.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2281

By:

Santamaría, Rodrigo;
Pierre, Philippe

Publication type:

Article

Discriminative local subspaces in gene expression data for effective gene function prediction.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2256, doi. 10.1093/bioinformatics/bts455

By:

Puelma, Tomas;
Gutiérrez, Rodrigo A.;
Soto, Alvaro

Publication type:

Article

MyMiner: a web application for computer-assisted biocuration and text annotation.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2285, doi. 10.1093/bioinformatics/bts435

By:

Salgado, David;
Krallinger, Martin;
Depaule, Marc;
Drula, Elodie;
Tendulkar, Ashish V.;
Leitner, Florian;
Valencia, Alfonso;
Marcelle, Christophe

Publication type:

Article

Bayesian sampling of evolutionarily conserved RNA secondary structures with pseudoknots.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2242, doi. 10.1093/bioinformatics/bts369

By:

Doose, Gero;
Metzler, Dirk

Publication type:

Article

PurityEst: estimating purity of human tumor samples using next-generation sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2265

By:

Su, Xiaoping;
Zhang, Li;
Zhang, Jianping;
Meric-Bernstam, Funda;
Weinstein, John N.

Publication type:

Article

imDEV: a graphical user interface to R multivariate analysis tools in Microsoft Excel.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2288, doi. 10.1093/bioinformatics/bts439

By:

Grapov, Dmitry;
Newman, John W.

Publication type:

Article

Improved gap size estimation for scaffolding algorithms.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2215, doi. 10.1093/bioinformatics/bts441

By:

Sahlin, Kristoffer;
Street, Nathaniel;
Lundeberg, Joakim;
Arvestad, Lars

Publication type:

Article

OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2274, doi. 10.1093/bioinformatics/bts419

By:

Alachiotis, N.;
Stamatakis, A.;
Pavlidis, P.

Publication type:

Article

Gene and translation initiation site prediction in metagenomic sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2223, doi. 10.1093/bioinformatics/bts429

By:

Hyatt, Doug;
LoCascio, Philip F.;
Hauser, Loren J.;
Uberbacher, Edward C.

Publication type:

Article

A sequence comparison and gene expression data integration add-on for the Pathway Tools software.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2283, doi. 10.1093/bioinformatics/bts431

By:

Krempl, Peter M.;
Mairhofer, Juergen;
Striedner, Gerald;
Thallinger, Gerhard G.

Publication type:

Article

dbSNO: a database of cysteine S-nitrosylation.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2293, doi. 10.1093/bioinformatics/bts436

By:

Lee, Tzong-Yi;
Chen, Yi-Ju;
Lu, Cheng-Tsung;
Ching, Wei-Chieh;
Teng, Yu-Chuan;
Huang, Hsien-Da;
Chen, Yu-Ju

Publication type:

Article

MSeasy: unsupervised and untargeted GC-MS data processing.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2278

By:

Nicolè, Florence;
Guitton, Yann;
Courtois, Elodie A.;
Moja, Sandrine;
Legendre, Laurent;
Hossaert-McKey, Martine

Publication type:

Article

Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2272, doi. 10.1093/bioinformatics/bts430

By:

Zoubarev, Anton;
Hamer, Kelsey M.;
Keshav, Kiran D.;
McCarthy, E. Luke;
Santos, Joseph Roy C.;
Van Rossum, Thea;
McDonald, Cameron;
Hall, Adam;
Wan, Xiang;
Lim, Raymond;
Gillis, Jesse;
Pavlidis, Paul

Publication type:

Article

AraPath: a knowledgebase for pathway analysis in Arabidopsis.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2291, doi. 10.1093/bioinformatics/bts421

By:

Lai, Liming;
Liberzon, Arthur;
Hennessey, Jason;
Jiang, Gaixin;
Qi, Jianli;
Mesirov, Jill P.;
Ge, Steven X.

Publication type:

Article