Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 16

Results: 29

AutoBind: automatic extraction of protein–ligand-binding affinity data from biological literature.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2162, doi. 10.1093/bioinformatics/bts367

By:

Chang, Darby Tien-Hao;
Ke, Chao-Hsuan;
Lin, Jung-Hsin;
Chiang, Jung-Hsien

Publication type:

Article

Response to ‘Comments on “MMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets”’.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2213, doi. 10.1093/bioinformatics/bts347

By:

Wang, Tuobin;
Kettenbach, Arminja N.;
Gerber, Scott A.;
Bailey-Kellogg, Chris

Publication type:

Article

gSearch: a fast and flexible general search tool for whole-genome sequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2176, doi. 10.1093/bioinformatics/bts358

By:

Song, Taemin;
Hwang, Kyu-Baek;
Hsing, Michael;
Lee, Kyungjoon;
Bohn, Justin;
Kong, Sek Won

Publication type:

Article

BatMis: a fast algorithm for k-mismatch mapping.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2122, doi. 10.1093/bioinformatics/bts339

By:

Tennakoon, Chandana;
Purbojati, Rikky W.;
Sung, Wing-Kin

Publication type:

Article

Identification of feedback loops in neural networks based on multi-step Granger causality.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2146, doi. 10.1093/bioinformatics/bts354

By:

Dong, Chao-Yi;
Shin, Dongkwan;
Joo, Sunghoon;
Nam, YoonKey;
Cho, Kwang-Hyun

Publication type:

Article

SORTALLER: predicting allergens using substantially optimized algorithm on allergen family featured peptides.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2178, doi. 10.1093/bioinformatics/bts326

By:

Zhang, Lida;
Huang, Yuyi;
Zou, Zehong;
He, Ying;
Chen, Ximo;
Tao, Ailin

Publication type:

Article

DySC: software for greedy clustering of 16S rRNA reads.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2182, doi. 10.1093/bioinformatics/bts355

By:

Zheng, Zejun;
Kramer, Stefan;
Schmidt, Bertil

Publication type:

Article

mcaGUI: microbial community analysis R-Graphical User Interface (GUI).

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2198, doi. 10.1093/bioinformatics/bts338

By:

Copeland, Wade K.;
Krishnan, Vandhana;
Beck, Daniel;
Settles, Matt;
Foster, James A.;
Cho, Kyu-Chul;
Day, Mitch;
Hickey, Roxana;
Schütte, Ursel M.E.;
Zhou, Xia;
Williams, Christopher J.;
Forney, Larry J.;
Abdo, Zaid

Publication type:

Article

ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2202, doi. 10.1093/bioinformatics/bts352

By:

Szalay-Bekő, Máté;
Palotai, Robin;
Szappanos, Balázs;
Kovács, István A.;
Papp, Balázs;
Csermely, Péter

Publication type:

Article

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2169, doi. 10.1093/bioinformatics/bts350

By:

Hoehndorf, Robert;
Dumontier, Michel;
Gkoutos, Georgios V.

Publication type:

Article

GO-Elite: a flexible solution for pathway and ontology over-representation.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2209, doi. 10.1093/bioinformatics/bts366

By:

Zambon, Alexander C.;
Gaj, Stan;
Ho, Isaac;
Hanspers, Kristina;
Vranizan, Karen;
Evelo, Chris T.;
Conklin, Bruce R.;
Pico, Alexander R.;
Salomonis, Nathan

Publication type:

Article

ChromoHub: a data hub for navigators of chromatin-mediated signalling.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2205, doi. 10.1093/bioinformatics/bts340

By:

Liu, Lihua;
Zhen, Xi Ting;
Denton, Emily;
Marsden, Brian D.;
Schapira, Matthieu

Publication type:

Article

ETAscape: analyzing protein networks to predict enzymatic function and substrates in Cytoscape.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2186, doi. 10.1093/bioinformatics/bts331

By:

Bachman, Benjamin J.;
Venner, Eric;
Lua, Rhonald C.;
Erdin, Serkan;
Lichtarge, Olivier

Publication type:

Article

Bendix: intuitive helix geometry analysis and abstraction.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2193, doi. 10.1093/bioinformatics/bts357

By:

Dahl, Anna Caroline E.;
Chavent, Matthieu;
Sansom, Mark S. P.

Publication type:

Article

RSeQC: quality control of RNA-seq experiments.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2184, doi. 10.1093/bioinformatics/bts356

By:

Wang, Liguo;
Wang, Shengqin;
Li, Wei

Publication type:

Article

NetCmpt: a network-based tool for calculating the metabolic competition between bacterial species.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2195, doi. 10.1093/bioinformatics/bts323

By:

Kreimer, Anat;
Doron-Faigenboim, Adi;
Borenstein, Elhanan;
Freilich, Shiri

Publication type:

Article

Bluues server: electrostatic properties of wild-type and mutated protein structures.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2189, doi. 10.1093/bioinformatics/bts343

By:

Walsh, Ian;
Minervini, Giovanni;
Corazza, Alessandra;
Esposito, Gennaro;
Tosatto, Silvio C. E.;
Fogolari, Federico

Publication type:

Article

BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2154, doi. 10.1093/bioinformatics/bts332

By:

Gerner, Martin;
Sarafraz, Farzaneh;
Bergman, Casey M.;
Nenadic, Goran

Publication type:

Article

Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2097, doi. 10.1093/bioinformatics/bts330

By:

Lee, Hayan;
Schatz, Michael C.

Publication type:

Article

Accelerated protein structure comparison using TM-score-GPU.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2191, doi. 10.1093/bioinformatics/bts345

By:

Hung, Ling-Hong;
Samudrala, Ram

Publication type:

Article

Comments on ‘MMFPh: A Maximal Motif Finder for Phosphoproteomics Datasets’.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2211

By:

He, Zengyou;
Gong, Haipeng

Publication type:

Article

SAAP-RRBS: streamlined analysis and annotation pipeline for reduced representation bisulfite sequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2180, doi. 10.1093/bioinformatics/bts337

By:

Sun, Zhifu;
Baheti, Saurabh;
Middha, Sumit;
Kanwar, Rahul;
Zhang, Yuji;
Li, Xing;
Beutler, Andreas S.;
Klee, Eric;
Asmann, Yan W.;
Thompson, E. Aubrey;
Kocher, Jean-Pierre A.

Publication type:

Article

Topology of functional networks predicts physical binding of proteins.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2137

By:

Saraç, Ömer Sinan;
Pancaldi, Vera;
Bähler, Jürg;
Beyer, Andreas

Publication type:

Article

Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts discovery based on accurate fusion model.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2114, doi. 10.1093/bioinformatics/bts334

By:

Abate, Francesco;
Acquaviva, Andrea;
Paciello, Giulia;
Foti, Carmelo;
Ficarra, Elisa;
Ferrarini, Alberto;
Delledonne, Massimo;
Iacobucci, Ilaria;
Soverini, Simona;
Martinelli, Giovanni;
Macii, Enrico

Publication type:

Article

MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2200, doi. 10.1093/bioinformatics/bts349

By:

Wildenhain, Jan;
FitzGerald, Nicholas;
Tyers, Mike

Publication type:

Article

BIDDSAT: visualizing the content of biodiversity data publishers in the Global Biodiversity Information Facility network.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2207, doi. 10.1093/bioinformatics/bts359

By:

Otegui, Javier;
Ariño, Arturo H.

Publication type:

Article

RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2129, doi. 10.1093/bioinformatics/bts341

By:

Sahraeian, Sayed Mohammad Ebrahim;
Yoon, Byung-Jun

Publication type:

Article

Associating microbiome composition with environmental covariates using generalized UniFrac distances.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2106, doi. 10.1093/bioinformatics/bts342

By:

Chen, Jun;
Bittinger, Kyle;
Charlson, Emily S.;
Hoffmann, Christian;
Lewis, James;
Wu, Gary D.;
Collman, Ronald G.;
Bushman, Frederic D.;
Li, Hongzhe

Publication type:

Article

Performance of computational tools in evaluating the functional impact of laboratory-induced amino acid mutations.

Published in:

Bioinformatics, 2012, v. 28, n. 16, p. 2093, doi. 10.1093/bioinformatics/bts336

By:

Gray, Vanessa E.;
Kukurba, Kimberly R.;
Kumar, Sudhir

Publication type:

Article