Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 14

Results: 32

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1923, doi. 10.1093/bioinformatics/bts272

By:

Chen, Ken;
Wallis, John W.;
Kandoth, Cyriac;
Kalicki−Veizer, Joelle M.;
Mungall, Karen L.;
Mungall, Andrew J.;
Jones, Steven J.;
Marra, Marco A.;
Ley, Timothy J.;
Mardis, Elaine R.;
Wilson, Richard K.;
Weinstein, John N.;
Ding, Li

Publication type:

Article

Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1811, doi. 10.1093/bioinformatics/bts271

By:

Saunders, Christopher T.;
Wong, Wendy S. W.;
Swamy, Sajani;
Becq, Jennifer;
Murray, Lisa J.;
Cheetham, R. Keira

Publication type:

Article

Marker2sequence, mine your QTL regions for candidate genes.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1921, doi. 10.1093/bioinformatics/bts298

By:

Chibon, Pierre-Yves;
Schoof, Heiko;
Visser, Richard G.F.;
Finkers, Richard

Publication type:

Article

IRView: a database and viewer for protein interacting regions.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1949, doi. 10.1093/bioinformatics/bts289

By:

Fujimori, Shigeo;
Hirai, Naoya;
Masuoka, Kazuyo;
Oshikubo, Tomohiro;
Yamashita, Tatsuhiro;
Washio, Takanori;
Saito, Ayumu;
Nagasaki, Masao;
Miyano, Satoru;
Miyamoto-Sato, Etsuko

Publication type:

Article

A holistic in silico approach to predict functional sites in protein structures.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1845, doi. 10.1093/bioinformatics/bts269

By:

Segura, Joan;
Jones, Pamela F.;
Fernandez-Fuentes, Narcis

Publication type:

Article

Gossamer — a resource-efficient de novo assembler.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1937, doi. 10.1093/bioinformatics/bts297

By:

Conway, Thomas;
Wazny, Jeremy;
Bromage, Andrew;
Zobel, Justin;
Beresford-Smith, Bryan

Publication type:

Article

The Hematopoietic Expression Viewer: expanding mobile apps as a scientific tool.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1941, doi. 10.1093/bioinformatics/bts279

By:

James, Regis A.;
Rao, Mitchell M.;
Chen, Edward S.;
Goodell, Margaret A.;
Shaw, Chad A.

Publication type:

Article

HCS-Analyzer: open source software for high-content screening data correction and analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1945, doi. 10.1093/bioinformatics/bts288

By:

Ogier, Arnaud;
Dorval, Thierry

Publication type:

Article

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1823, doi. 10.1093/bioinformatics/bts252

By:

Pruesse, Elmar;
Peplies, Jörg;
Glöckner, Frank Oliver

Publication type:

Article

Robustness and accuracy of functional modules in integrated network analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1887, doi. 10.1093/bioinformatics/bts265

By:

Beisser, Daniela;
Brunkhorst, Stefan;
Dandekar, Thomas;
Klau, Gunnar W.;
Dittrich, Marcus T.;
Müller, Tobias

Publication type:

Article

Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1865, doi. 10.1093/bioinformatics/bts266

By:

Piasecka, Barbara;
Robinson-Rechavi, Marc;
Bergmann, Sven

Publication type:

Article

iFad: an integrative factor analysis model for drug-pathway association inference†.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1911, doi. 10.1093/bioinformatics/bts285

By:

Ma, Haisu;
Zhao, Hongyu

Publication type:

Article

Fast computation for genome-wide association studies using boosted one-step statistics.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1818, doi. 10.1093/bioinformatics/bts291

By:

Voorman, Arend;
Rice, Ken;
Lumley, Thomas

Publication type:

Article

Efficient RNA pairwise structure comparison by SETTER method.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1858, doi. 10.1093/bioinformatics/bts301

By:

Hoksza, David;
Svozil, Daniel

Publication type:

Article

MicrobeDB: a locally maintainable database of microbial genomic sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1947, doi. 10.1093/bioinformatics/bts273

By:

Langille, Morgan G. I.;
Laird, Matthew R.;
Hsiao, William W. L.;
Chiu, Terry A.;
Eisen, Jonathan A.;
Brinkman, Fiona S. L.

Publication type:

Article

Exhaustive database searching for amino acid mutations in proteomes.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1895, doi. 10.1093/bioinformatics/bts274

By:

Hyatt, Doug;
Pan, Chongle

Publication type:

Article

BEDOPS: high-performance genomic feature operations.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1919, doi. 10.1093/bioinformatics/bts277

By:

Neph, Shane;
Kuehn, M. Scott;
Reynolds, Alex P.;
Haugen, Eric;
Thurman, Robert E.;
Johnson, Audra K.;
Rynes, Eric;
Maurano, Matthew T.;
Vierstra, Jeff;
Thomas, Sean;
Sandstrom, Richard;
Humbert, Richard;
Stamatoyannopoulos, John A.

Publication type:

Article

CodonLogo: a sequence logo-based viewer for codon patterns.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1935, doi. 10.1093/bioinformatics/bts295

By:

Sharma, Virag;
Murphy, David P.;
Provan, Gregory;
Baranov, Pavel V.

Publication type:

Article

Identifying mechanistic similarities in drug responses.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1902, doi. 10.1093/bioinformatics/bts290

By:

Zhao, Chen;
Hua, Jianping;
Bittner, Michael L.;
Ivanov, Ivan;
Dougherty, and Edward R.

Publication type:

Article

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1830, doi. 10.1093/bioinformatics/bts276

By:

Liu, Yongchao;
Schmidt, Bertil;
Maskell, Douglas L.

Publication type:

Article

Anonymous nuclear loci in non-model organisms: making the most of high-throughput genome surveys.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1807, doi. 10.1093/bioinformatics/bts284

By:

Bertozzi, Terry;
Sanders, Kate L.;
Sistrom, Mark J.;
Gardner, Michael G.

Publication type:

Article

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1851, doi. 10.1093/bioinformatics/bts292

By:

Buenavista, Maria T.;
Roche, Daniel B.;
McGuffin, Liam J.

Publication type:

Article

Mosaic: making biological sense of complex networks.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1943, doi. 10.1093/bioinformatics/bts278

By:

Zhang, Chao;
Hanspers, Kristina;
Kuchinsky, Allan;
Salomonis, Nathan;
Xu, Dong;
Pico, Alexander R.

Publication type:

Article

Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1838

By:

Li, Heng

Publication type:

Article

SRMA: an R package for resequencing array data analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1928, doi. 10.1093/bioinformatics/bts286

By:

Zhang, Nianxiang;
Xu, Yan;
O'Hely, Martin;
Speed, Terence P.;
Scharfe, Curt;
Wang, Wenyi

Publication type:

Article

regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1879, doi. 10.1093/bioinformatics/bts275

By:

Teng, Mingxiang;
Ichikawa, Shoji;
Padgett, Leah R.;
Wang, Yadong;
Mort, Matthew;
Cooper, David N.;
Koller, Daniel L.;
Foroud, Tatiana;
Edenberg, Howard J.;
Econs, Michael J.;
Liu, Yunlong

Publication type:

Article

R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1939, doi. 10.1093/bioinformatics/bts268

By:

Dawson, John A.;
Ye, Shuyun;
Kendziorski, Christina

Publication type:

Article

MotifSuite: workflow for probabilistic motif detection and assessment.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1931, doi. 10.1093/bioinformatics/bts293

By:

Claeys, Marleen;
Storms, Valerie;
Sun, Hong;
Michoel, Tom;
Marchal, Kathleen

Publication type:

Article

CPSS: a computational platform for the analysis of small RNA deep sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1925, doi. 10.1093/bioinformatics/bts282

By:

Zhang, Yuanwei;
Xu, Bo;
Yang, Yifan;
Ban, Rongjun;
Zhang, Huan;
Jiang, Xiaohua;
Cooke, Howard J.;
Xue, Yu;
Shi, Qinghua

Publication type:

Article

Small-molecule inhibitor starting points learned from protein–protein interaction inhibitor structure.

Published in:

2012

By:

Koes, David Ryan;
Camacho, Carlos J.

Publication type:

Correction Notice

Genome-scale analysis of interaction dynamics reveals organization of biological networks.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1873, doi. 10.1093/bioinformatics/bts283

By:

Das, Jishnu;
Mohammed, Jaaved;
Yu, Haiyuan

Publication type:

Article

OSA: a fast and accurate alignment tool for RNA-Seq.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1933, doi. 10.1093/bioinformatics/bts294

By:

Hu, Jun;
Ge, Huanying;
Newman, Matt;
Liu, Kejun

Publication type:

Article