Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 12

Results: 61

Automated gene-model curation using global discriminative learning.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1571, doi. 10.1093/bioinformatics/bts176

By:

Bernal, Axel;
Crammer, Koby;
Pereira, Fernando

Publication type:

Article

Lineage-based identification of cellular states and expression programs.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i250, doi. 10.1093/bioinformatics/bts204

By:

Hashimoto, Tatsunori;
Jaakkola, Tommi;
Sherwood, Richard;
Mazzoni, Esteban O.;
Wichterle, Hynek;
Gifford, David

Publication type:

Article

A conditional neural fields model for protein threading.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i59, doi. 10.1093/bioinformatics/bts213

By:

Ma, Jianzhu;
Peng, Jian;
Wang, Sheng;
Xu, Jinbo

Publication type:

Article

NuST: analysis of the interplay between nucleoid organization and gene expression.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1643, doi. 10.1093/bioinformatics/bts201

By:

Scolari, Vittore F.;
Zarei, Mina;
Osella, Matteo;
Cosentino Lagomarsino, Marco

Publication type:

Article

Xenome—a tool for classifying reads from xenograft samples.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i172, doi. 10.1093/bioinformatics/bts236

By:

Conway, Thomas;
Wazny, Jeremy;
Bromage, Andrew;
Tymms, Martin;
Sooraj, Dhanya;
Williams, Elizabeth D.;
Beresford-Smith, Bryan

Publication type:

Article

ISMB 2012 PROCEEDINGS PAPERS COMMITTEE.

Published in:: Bioinformatics, 2012, v. 28, n. 12, p. i2, doi. 10.1093/bioinformatics/bts287
Publication type:: Article

Improving the TFold test for differential shotgun proteomics.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1652, doi. 10.1093/bioinformatics/bts247

By:

Carvalho, Paulo C.;
Yates, John R.;
Barbosa, Valmir C.

Publication type:

Article

Novel domain combinations in proteins encoded by chimeric transcripts.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i67, doi. 10.1093/bioinformatics/bts216

By:

Frenkel-Morgenstern, Milana;
Valencia, Alfonso

Publication type:

Article

optiCall: a robust genotype-calling algorithm for rare, low-frequency and common variants.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1598, doi. 10.1093/bioinformatics/bts180

By:

Shah, T. S.;
Liu, J. Z.;
Floyd, J. A. B.;
Morris, J. A.;
Wirth, N.;
Barrett, J. C.;
Anderson, C. A.

Publication type:

Article

Fast alignment of fragmentation trees.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i265, doi. 10.1093/bioinformatics/bts207

By:

Hufsky, Franziska;
Dührkop, Kai;
Rasche, Florian;
Chimani, Markus;
Böcker, Sebastian

Publication type:

Article

ChemSpot: a hybrid system for chemical named entity recognition.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1633, doi. 10.1093/bioinformatics/bts183

By:

Rocktäschel, Tim;
Weidlich, Michael;
Leser, Ulf

Publication type:

Article

MMFPh: a maximal motif finder for phosphoproteomics datasets.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1562, doi. 10.1093/bioinformatics/bts195

By:

Wang, Tuobin;
Kettenbach, Arminja N.;
Gerber, Scott A.;
Bailey-Kellogg, Chris

Publication type:

Article

Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i137, doi. 10.1093/bioinformatics/bts227

By:

Lee, Seunghak;
Xing, Eric P.

Publication type:

Article

graph2tab, a library to convert experimental workflow graphs into tabular formats.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1665, doi. 10.1093/bioinformatics/bts258

By:

Brandizi, Marco;
Kurbatova, Natalja;
Sarkans, Ugis;
Rocca-Serra, Philippe

Publication type:

Article

Identifying disease sensitive and quantitative trait-relevant biomarkers from multidimensional heterogeneous imaging genetics data via sparse multimodal multitask learning.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i127

By:

Wang, Hua;
Nie, Feiping;
Huang, Heng;
Risacher, Shannon L.;
Saykin, Andrew J.;
Shen, Li

Publication type:

Article

Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i106, doi. 10.1093/bioinformatics/bts232

By:

Hochbaum, Dorit S.;
Hsu, Chun-Nan;
Yang, Yan T.

Publication type:

Article

A single source k-shortest paths algorithm to infer regulatory pathways in a gene network.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i49, doi. 10.1093/bioinformatics/bts212

By:

Shih, Yu-Keng;
Parthasarathy, Srinivasan

Publication type:

Article

GraphClust: alignment-free structural clustering of local RNA secondary structures.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i224, doi. 10.1093/bioinformatics/bts224

By:

Heyne, Steffen;
Costa, Fabrizio;
Rose, Dominic;
Backofen, Rolf

Publication type:

Article

Improved synapse detection for mGRASP-assisted brain connectivity mapping.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i25, doi. 10.1093/bioinformatics/bts221

By:

Feng, Linqing;
Zhao, Ting;
Kim, Jinhyun

Publication type:

Article

Estimating the order of mutations during tumorigenesis from tumor genome sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1555, doi. 10.1093/bioinformatics/bts168

By:

Youn, Ahrim;
Simon, Richard

Publication type:

Article

Truncated branch and bound achieves efficient constraint-based genetic design.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1619, doi. 10.1093/bioinformatics/bts255

By:

Egen, Dennis;
Lun, Desmond S.

Publication type:

Article

Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1645, doi. 10.1093/bioinformatics/bts197

By:

Tan, Joshua;
Kuchibhatla, Durga;
Sirota, Fernanda L.;
Sherman, Westley A.;
Gattermayer, Tobias;
Kwoh, Chia Yee;
Eisenhaber, Frank;
Schneider, Georg;
Maurer-Stroh, Sebastian

Publication type:

Article

Data-driven integration of epidemiological and toxicological data to select candidate interacting genes and environmental factors in association with disease.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i121, doi. 10.1093/bioinformatics/bts229

By:

Patel, Chirag J.;
Chen, Rong;
Butte, Atul J.

Publication type:

Article

Weighted pooling—practical and cost-effective techniques for pooled high-throughput sequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i197, doi. 10.1093/bioinformatics/bts208

By:

Golan, David;
Erlich, Yaniv;
Rosset, Saharon

Publication type:

Article

FindGeo: a tool for determining metal coordination geometry.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1658, doi. 10.1093/bioinformatics/bts246

By:

Andreini, Claudia;
Cavallaro, Gabriele;
Lorenzini, Serena

Publication type:

Article

Editorial.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i1, doi. 10.1093/bioinformatics/bts281

By:

Berger, Bonnie

Publication type:

Article

AUTHOR INDEX.

Published in:: Bioinformatics, 2012, v. 28, n. 12, p. i301, doi. 10.1093/bioinformatics/bts324
Publication type:: Article

Recognition models to predict DNA-binding specificities of homeodomain proteins.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i84, doi. 10.1093/bioinformatics/bts202

By:

Christensen, Ryan G.;
Enuameh, Metewo Selase;
Noyes, Marcus B.;
Brodsky, Michael H.;
Wolfe, Scot A.;
Stormo, Gary D.

Publication type:

Article

Extending ontologies by finding siblings using set expansion techniques.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i292, doi. 10.1093/bioinformatics/bts215

By:

Fabian, Götz;
Wächter, Thomas;
Schroeder, Michael

Publication type:

Article

Ranking viruses: measures of positional importance within networks define core viruses for rational polyvalent vaccine development.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1624, doi. 10.1093/bioinformatics/bts181

By:

Anderson, Tavis K.;
Laegreid, William W.;
Cerutti, Francesco;
Osorio, Fernando A.;
Nelson, Eric A.;
Christopher-Hennings, Jane;
Goldberg, Tony L.

Publication type:

Article

RFMapp: ribosome flow model application.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1663, doi. 10.1093/bioinformatics/bts185

By:

Zur, Hadas;
Tuller, Tamir

Publication type:

Article

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i283, doi. 10.1093/bioinformatics/bts225

By:

Bansal, Mukul S.;
Alm, Eric J.;
Kellis, Manolis

Publication type:

Article

Nonparametric Bayesian inference for perturbed and orthologous gene regulatory networks.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i233, doi. 10.1093/bioinformatics/bts222

By:

Penfold, Christopher A.;
Buchanan-Wollaston, Vicky;
Denby, Katherine J.;
Wild, David L.

Publication type:

Article

Detection of allele-specific methylation through a generalized heterogeneous epigenome model.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i163, doi. 10.1093/bioinformatics/bts231

By:

Peng, Qian;
Ecker, Joseph R.

Publication type:

Article

How networks change with time.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i40, doi. 10.1093/bioinformatics/bts211

By:

Park, Yongjin;
Bader, Joel S.

Publication type:

Article

NOrMAL: accurate nucleosome positioning using a modified Gaussian mixture model.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i242, doi. 10.1093/bioinformatics/bts206

By:

Polishko, Anton;
Ponts, Nadia;
Le Roch, Karine G.;
Lonardi, Stefano

Publication type:

Article

DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1655, doi. 10.1093/bioinformatics/bts200

By:

Smith, Nicholas;
Witham, Shawn;
Sarkar, Subhra;
Zhang, Jie;
Li, Lin;
Li, Chuan;
Alexov, Emil

Publication type:

Article

Dissect: detection and characterization of novel structural alterations in transcribed sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i179, doi. 10.1093/bioinformatics/bts214

By:

Yorukoglu, Deniz;
Hach, Faraz;
Swanson, Lucas;
Collins, Colin C.;
Birol, Inanc;
Sahinalp, S. Cenk

Publication type:

Article

Protein subcellular location pattern classification in cellular images using latent discriminative models.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i32

By:

Li, Jieyue;
Xiong, Liang;
Schneider, Jeff;
Murphy, Robert F.

Publication type:

Article

SEQuel: improving the accuracy of genome assemblies.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i188, doi. 10.1093/bioinformatics/bts219

By:

Ronen, Roy;
Boucher, Christina;
Chitsaz, Hamidreza;
Pevzner, Pavel

Publication type:

Article

DACTAL: divide-and-conquer trees (almost) without alignments.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i274, doi. 10.1093/bioinformatics/bts218

By:

Nelesen, Serita;
Liu, Kevin;
Wang, Li-San;
Linder, C. Randal;
Warnow, Tandy

Publication type:

Article

A hybrid approach to protein differential expression in mass spectrometry-based proteomics.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1586, doi. 10.1093/bioinformatics/bts193

By:

Wang, Xuan;
Anderson, Gordon A.;
Smith, Richard D.;
Dabney, Alan R.

Publication type:

Article

Incorporating prior information into association studies.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i147, doi. 10.1093/bioinformatics/bts235

By:

Darnell, Gregory;
Duong, Dat;
Han, Buhm;
Eskin, Eleazar

Publication type:

Article

Utilizing RNA-Seq data for de novo coexpression network inference.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1592, doi. 10.1093/bioinformatics/bts245

By:

Iancu, Ovidiu D.;
Kawane, Sunita;
Bottomly, Daniel;
Searles, Robert;
Hitzemann, Robert;
McWeeney, Shannon

Publication type:

Article

DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i154, doi. 10.1093/bioinformatics/bts234

By:

Aguiar, Derek;
Halldórsson, Bjarni V.;
Morrow, Eric M.;
Istrail, Sorin

Publication type:

Article

Statistical model-based testing to evaluate the recurrence of genomic aberrations.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i115, doi. 10.1093/bioinformatics/bts203

By:

Niida, Atushi;
Imoto, Seiya;
Shimamura, Teppei;
Miyano, Satoru

Publication type:

Article

MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i75, doi. 10.1093/bioinformatics/bts209

By:

Disfani, Fatemeh Miri;
Hsu, Wei-Lun;
Mizianty, Marcin J.;
Oldfield, Christopher J.;
Xue, Bin;
Dunker, A. Keith;
Uversky, Vladimir N.;
Kurgan, Lukasz

Publication type:

Article

Ligand-binding site prediction using ligand-interacting and binding site-enriched protein triangles.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1579, doi. 10.1093/bioinformatics/bts182

By:

Xie, Zhong-Ru;
Hwang, Ming−Jing

Publication type:

Article

Minimum message length inference of secondary structure from protein coordinate data.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. i97, doi. 10.1093/bioinformatics/bts223

By:

Konagurthu, Arun S.;
Lesk, Arthur M.;
Allison, Lloyd

Publication type:

Article

TSSi—an R package for transcription start site identification from 5′ mRNA tag data.

Published in:

Bioinformatics, 2012, v. 28, n. 12, p. 1641, doi. 10.1093/bioinformatics/bts189

By:

Kreutz, C.;
Gehring, J. S.;
Lang, D.;
Reski, R.;
Timmer, J.;
Rensing, S. A.

Publication type:

Article