Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 11

Results: 27

Detection of differentially expressed segments in tiling array data.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1471, doi. 10.1093/bioinformatics/bts142

By:

Otto, Christian;
Reiche, Kristin;
Hackermüller, Jörg

Publication type:

Article

PaGeFinder: quantitative identification of spatiotemporal pattern genes.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1544, doi. 10.1093/bioinformatics/bts169

By:

Pan, Jian-Bo;
Hu, Shi-Chang;
Wang, Hao;
Zou, Quan;
Ji, Zhi-Liang

Publication type:

Article

Flexible-meccano: a tool for the generation of explicit ensemble descriptions of intrinsically disordered proteins and their associated experimental observables.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1463, doi. 10.1093/bioinformatics/bts172

By:

Ozenne, Valéry;
Bauer, Frédéric;
Salmon, Loïc;
Huang, Jie-rong;
Jensen, Malene Ringkjøbing;
Segard, Stéphane;
Bernadó, Pau;
Charavay, Céline;
Blackledge, Martin

Publication type:

Article

Approximate probabilistic analysis of biopathway dynamics.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1508, doi. 10.1093/bioinformatics/bts166

By:

Liu, Bing;
Hagiescu, Andrei;
Palaniappan, Sucheendra K.;
Chattopadhyay, Bipasa;
Cui, Zheng;
Wong, Weng-Fai;
Thiagarajan, P. S.

Publication type:

Article

Bpipe: a tool for running and managing bioinformatics pipelines.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1525, doi. 10.1093/bioinformatics/bts167

By:

Sadedin, Simon P.;
Pope, Bernard;
Oshlack, Alicia

Publication type:

Article

LOESS correction for length variation in gene set-based genomic sequence analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1446, doi. 10.1093/bioinformatics/bts155

By:

Aboukhalil, Anton;
Bulyk, Martha L.

Publication type:

Article

State and parameter estimation of the heat shock response system using Kalman and particle filters.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1501, doi. 10.1093/bioinformatics/bts161

By:

Liu, Xin;
Niranjan, Mahesan

Publication type:

Article

GeneclusterViz: a tool for conserved gene cluster visualization, exploration and analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1527, doi. 10.1093/bioinformatics/bts177

By:

Pejaver, Vikas R.;
An, Jaehyun;
Rhee, SungMin;
Bhan, Ankita;
Choi, Jeong-Hyeon;
Liu, Boshu;
Lee, Heewook;
Brown, Pamela J.;
Kysela, David;
Brun, Yves V.;
Kim, Sun

Publication type:

Article

A de novo metagenomic assembly program for shotgun DNA reads.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1455, doi. 10.1093/bioinformatics/bts162

By:

Lai, Binbin;
Ding, Ruogu;
Li, Yang;
Duan, Liping;
Zhu, Huaiqiu

Publication type:

Article

ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1536, doi. 10.1093/bioinformatics/bts184

By:

Popescu, Andrei-Alin;
Huber, Katharina T.;
Paradis, Emmanuel

Publication type:

Article

A comprehensive computational model of facilitated diffusion in prokaryotes.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1517, doi. 10.1093/bioinformatics/bts178

By:

Zabet, Nicolae Radu;
Adryan, Boris

Publication type:

Article

Rigorous assessment of gene set enrichment tests.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1480, doi. 10.1093/bioinformatics/bts164

By:

Naeem, Haroon;
Zimmer, Ralf;
Tavakkolkhah, Pegah;
Küffner, Robert

Publication type:

Article

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1420, doi. 10.1093/bioinformatics/bts174

By:

Peng, Yu;
Leung, Henry C. M.;
Yiu, S. M.;
Chin, Francis Y. L.

Publication type:

Article

NanoStringNorm: an extensible R package for the pre-processing of NanoString mRNA and miRNA data.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1546, doi. 10.1093/bioinformatics/bts188

By:

Waggott, Daryl;
Chu, Kenneth;
Yin, Shaoming;
Wouters, Bradly G.;
Liu, Fei-Fei;
Boutros, Paul C.

Publication type:

Article

GLOGS: a fast and powerful method for GWAS of binary traits with risk covariates in related populations.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1553, doi. 10.1093/bioinformatics/bts190

By:

Stanhope, Stephen A.;
Abney, Mark

Publication type:

Article

RNA-SeQC: RNA-seq metrics for quality control and process optimization.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1530, doi. 10.1093/bioinformatics/bts196

By:

DeLuca, David S.;
Levin, Joshua Z.;
Sivachenko, Andrey;
Fennell, Timothy;
Nazaire, Marc-Danie;
Williams, Chris;
Reich, Michael;
Winckler, Wendy;
Getz, Gad

Publication type:

Article

Large-scale compression of genomic sequence databases with the Burrows–Wheeler transform.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1415, doi. 10.1093/bioinformatics/bts173

By:

Cox, Anthony J.;
Bauer, Markus J.;
Jakobi, Tobias;
Rosone, Giovanna

Publication type:

Article

CheShift-2: graphic validation of protein structures.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1538, doi. 10.1093/bioinformatics/bts179

By:

Martin, Osvaldo A.;
Vila, Jorge A.;
Scheraga, Harold A.

Publication type:

Article

Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1438, doi. 10.1093/bioinformatics/bts149

By:

Chartier, Matthieu;
Gaudreault, Francis;
Najmanovich, Rafael

Publication type:

Article

pIRS: Profile-based Illumina pair-end reads simulator.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1533, doi. 10.1093/bioinformatics/bts187

By:

Hu, Xuesong;
Yuan, Jianying;
Shi, Yujian;
Lu, Jianliang;
Liu, Binghang;
Li, Zhenyu;
Chen, Yanxiang;
Mu, Desheng;
Zhang, Hao;
Li, Nan;
Yue, Zhen;
Bai, Fan;
Li, Heng;
Fan, Wei

Publication type:

Article

CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1549, doi. 10.1093/bioinformatics/bts171

By:

Szederkényi, Gábor;
Banga, Julio R.;
Alonso, Antonio A.

Publication type:

Article

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1429, doi. 10.1093/bioinformatics/bts175

By:

Gritsenko, Alexey A.;
Nijkamp, Jurgen F.;
Reinders, Marcel J.T.;
Ridder, Dick de

Publication type:

Article

e-Drug3D: 3D structure collections dedicated to drug repurposing and fragment-based drug design.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1540, doi. 10.1093/bioinformatics/bts186

By:

Pihan, Emilie;
Colliandre, Lionel;
Guichou, Jean-François;
Douguet, Dominique

Publication type:

Article

Bayesian integration of networks without gold standards.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1495, doi. 10.1093/bioinformatics/bts154

By:

Weile, Jochen;
James, Katherine;
Hallinan, Jennifer;
Cockell, Simon J.;
Lord, Phillip;
Wipat, Anil;
Wilkinson, Darren J.

Publication type:

Article

Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1542, doi. 10.1093/bioinformatics/bts165

By:

Jourdren, Laurent;
Bernard, Maria;
Dillies, Marie-Agnès;
Le Crom, Stéphane

Publication type:

Article

DeOri: a database of eukaryotic DNA replication origins.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1551, doi. 10.1093/bioinformatics/bts151

By:

Gao, Feng;
Luo, Hao;
Zhang, Chun-Ting

Publication type:

Article

Differential variability improves the identification of cancer risk markers in DNA methylation studies profiling precursor cancer lesions.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1487, doi. 10.1093/bioinformatics/bts170

By:

Teschendorff, Andrew E.;
Widschwendter, Martin

Publication type:

Article