Works matching IS 13674803 AND DT 2012 AND VI 28 AND IP 1

Results: 33

Protein subcellular localization of fluorescence imagery using spatial and transform domain features.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 91, doi. 10.1093/bioinformatics/btr624

By:

Tahir, Muhammad;
Khan, Asifullah;
Majid, Abdul

Publication type:

Article

Multifunctional proteins revealed by overlapping clustering in protein interaction network.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 84, doi. 10.1093/bioinformatics/btr621

By:

Becker, Emmanuelle;
Robisson, Benoît;
Chapple, Charles E.;
Guénoche, Alain;
Brun, Christine

Publication type:

Article

SVGMap: configurable image browser for experimental data.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 119, doi. 10.1093/bioinformatics/btr581

By:

Rafael-Palou, Xavier;
Schroeder, Michael P.;
Lopez-Bigas, Nuria

Publication type:

Article

Large-scale motif discovery using DNA Gray code and equiprobable oligomers.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 25, doi. 10.1093/bioinformatics/btr606

By:

Ichinose, Natsuhiro;
Yada, Tetsushi;
Gotoh, Osamu

Publication type:

Article

Decompositions of large-scale biological systems based on dynamical properties.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 76, doi. 10.1093/bioinformatics/btr620

By:

Soranzo, Nicola;
Ramezani, Fahimeh;
Iacono, Giovanni;
Altafini, Claudio

Publication type:

Article

Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 40, doi. 10.1093/bioinformatics/btr593

By:

Gusnanto, Arief;
Wood, Henry M.;
Pawitan, Yudi;
Rabbitts, Pamela;
Berri, Stefano

Publication type:

Article

Determining the evolutionary history of gene families.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 48, doi. 10.1093/bioinformatics/btr592

By:

Ames, Ryan M.;
Money, Daniel;
Ghatge, Vikramsinh P.;
Whelan, Simon;
Lovell, Simon C.

Publication type:

Article

MissForest—non-parametric missing value imputation for mixed-type data.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 112, doi. 10.1093/bioinformatics/btr597

By:

Stekhoven, Daniel J.;
Bühlmann, Peter

Publication type:

Article

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 17, doi. 10.1093/bioinformatics/btr598

By:

Langenberger, David;
Pundhir, Sachin;
Ekstrøm, Claus T.;
Stadler, Peter F.;
Hoffmann, Steve;
Gorodkin, Jan

Publication type:

Article

Epigenetic priors for identifying active transcription factor binding sites.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 56, doi. 10.1093/bioinformatics/btr614

By:

Cuellar-Partida, Gabriel;
Buske, Fabian A.;
McLeay, Robert C.;
Whitington, Tom;
Noble, William Stafford;
Bailey, Timothy L.

Publication type:

Article

Comments on ‘An empirical comparison of several recent epistatic interaction detection methods’.

Published in:

2012

By:

Wan, Xiang;
Yang, Can;
Yu, Weichuan

Publication type:

Letter

Time-course network analysis reveals TNF-α can promote G1/S transition of cell cycle in vascular endothelial cells.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 1, doi. 10.1093/bioinformatics/btr619

By:

Chen, Yang;
Gu, Jin;
Li, Dan;
Li, Shao

Publication type:

Article

Sensitive and fast mapping of di-base encoded reads.

Published in:

2012

By:

Hormozdiari, Farhad;
Hach, Faraz;
Sahinalp, S. Cenk;
Eichler, Evan E.;
Alkan, Can

Publication type:

Correction Notice

CellAnimation: an open source MATLAB framework for microscopy assays.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 138, doi. 10.1093/bioinformatics/btr633

By:

Georgescu, Walter;
Wikswo, John P.;
Quaranta, Vito

Publication type:

Article

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 125, doi. 10.1093/bioinformatics/btr595

By:

Zhao, Yongan;
Tang, Haixu;
Ye, Yuzhen

Publication type:

Article

AMPA: an automated web server for prediction of protein antimicrobial regions.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 130, doi. 10.1093/bioinformatics/btr604

By:

Torrent, Marc;
Di Tommaso, Paolo;
Pulido, David;
Nogués, M. Victòria;
Notredame, Cedric;
Boix, Ester;
Andreu, David

Publication type:

Article

Gene Ontology-driven inference of protein–protein interactions using inducers.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 69, doi. 10.1093/bioinformatics/btr610

By:

Maetschke, Stefan R.;
Simonsen, Martin;
Davis, Melissa J.;
Ragan, Mark A.

Publication type:

Article

Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 63, doi. 10.1093/bioinformatics/btr616

By:

Hu, Ming;
Zhu, Yu;
Taylor, Jeremy M. G.;
Liu, Jun S.;
Qin, Zhaohui S.

Publication type:

Article

MR-Tandem: parallel X!Tandem using Hadoop MapReduce on Amazon Web Services.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 136, doi. 10.1093/bioinformatics/btr615

By:

Pratt, Brian;
Howbert, J. Jeffry;
Tasman, Natalie I.;
Nilsson, Erik J.

Publication type:

Article

Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 127, doi. 10.1093/bioinformatics/btr602

By:

Kalkatawi, Manal;
Rangkuti, Farania;
Schramm, Michael;
Jankovic, Boris R.;
Kamau, Allan;
Chowdhary, Rajesh;
Archer, John A. C.;
Bajic, Vladimir B.

Publication type:

Article

Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 98, doi. 10.1093/bioinformatics/btr626

By:

Zhang, Xiujun;
Zhao, Xing-Ming;
He, Kun;
Lu, Le;
Cao, Yongwei;
Liu, Jingdong;
Hao, Jin-Kao;
Liu, Zhi-Ping;
Chen, Luonan

Publication type:

Article

Graph accordance of next-generation sequence assemblies.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 13, doi. 10.1093/bioinformatics/btr588

By:

Yao, Guohui;
Ye, Liang;
Gao, Hongyu;
Minx, Patrick;
Warren, Wesley C.;
Weinstock, George M.

Publication type:

Article

A robust clustering algorithm for identifying problematic samples in genome-wide association studies.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 134

By:

Bellenguez, Céline;
Strange, Amy;
Freeman, Colin;
Donnelly, Peter;
Spencer, Chris C.A.

Publication type:

Article

AURA: Atlas of UTR Regulatory Activity.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 142, doi. 10.1093/bioinformatics/btr608

By:

Dassi, E.;
Malossini, A.;
Re, A.;
Mazza, T.;
Tebaldi, T.;
Caputi, L.;
Quattrone, A.

Publication type:

Article

A novel structural position-specific scoring matrix for the prediction of protein secondary structures.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 32

By:

Li, Dapeng;
Li, Tonghua;
Cong, Peisheng;
Xiong, Wenwei;
Sun, Jiangming

Publication type:

Article

Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets.

Published in:

2012

By:

Brown, Marie;
Wedge, David C.;
Goodacre, Royston;
Kell, Douglas B.;
Baker, Philip N.;
Kenny, Louise C.;
Mamas, Mamas A.;
Neyses, Ludwig;
Dunn, Warwick B.

Publication type:

Correction Notice

Detecting differential binding of transcription factors with ChIP-seq.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 121, doi. 10.1093/bioinformatics/btr605

By:

Liang, Kun;
Keleş, Sündüz

Publication type:

Article

PubChem promiscuity: a web resource for gathering compound promiscuity data from PubChem.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 140, doi. 10.1093/bioinformatics/btr622

By:

Canny, Stephanie A.;
Cruz, Yasel;
Southern, Mark R.;
Griffin, Patrick R.

Publication type:

Article

Detecting genome-wide epistases based on the clustering of relatively frequent items.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 5, doi. 10.1093/bioinformatics/btr603

By:

Xie, Minzhu;
Li, Jing;
Jiang, Tao

Publication type:

Article

Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 105, doi. 10.1093/bioinformatics/btr625

By:

Chen, Edward Y.;
Xu, Huilei;
Gordonov, Simon;
Lim, Maribel P.;
Perkins, Matthew H.;
Ma'ayan, Avi

Publication type:

Article

QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 132, doi. 10.1093/bioinformatics/btr627

By:

Prosperi, Mattia C. F.;
Salemi, Marco

Publication type:

Article

rNA: a fast and accurate short reads numerical aligner.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 123, doi. 10.1093/bioinformatics/btr617

By:

Vezzi, Francesco;
Del Fabbro, Cristian;
Tomescu, Alexandru I.;
Policriti, Alberto

Publication type:

Article

Response: an empirical comparison of several recent epistatic interaction detection methods.

Published in:

2012

By:

Wang, Yue;
Liu, Guimei;
Feng, Mengling;
Wong, Limsoon

Publication type:

Letter