Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 8

Results: 35

MPID-T2: a database for sequence–structure–function analyses of pMHC and TR/pMHC structures.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1192, doi. 10.1093/bioinformatics/btr104

By:

Khan, Javed Mohammed;
Cheruku, Harish Reddy;
Tong, Joo Chuan;
Ranganathan, Shoba

Publication type:

Article

A comprehensive protein-centric ID mapping service for molecular data integration.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1190, doi. 10.1093/bioinformatics/btr101

By:

Huang, Hongzhan;
McGarvey, Peter B.;
Suzek, Baris E.;
Mazumder, Raja;
Zhang, Jian;
Chen, Yongxing;
Wu, Cathy H.

Publication type:

Article

The effects of feedback loops on disease comorbidity in human signaling networks.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1113, doi. 10.1093/bioinformatics/btr082

By:

Le, Duc-Hau;
Kwon, Yung-Keun

Publication type:

Article

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1179, doi. 10.1093/bioinformatics/btr095

By:

Kamentsky, Lee;
Jones, Thouis R.;
Fraser, Adam;
Bray, Mark-Anthony;
Logan, David J.;
Madden, Katherine L.;
Ljosa, Vebjorn;
Rueden, Curtis;
Eliceiri, Kevin W.;
Carpenter, Anne E.

Publication type:

Article

Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1108, doi. 10.1093/bioinformatics/btr079

By:

Brown, Marie;
Wedge, David C.;
Goodacre, Royston;
Kell, Douglas B.;
Baker, Philip N.;
Kenny, Louise C.;
Mamas, Mamas A.;
Neyses, Ludwig;
Dunn, Warwick B.

Publication type:

Article

Topology and prediction of RNA pseudoknots.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1076, doi. 10.1093/bioinformatics/btr090

By:

Reidys, Christian M.;
Huang, Fenix W. D.;
Andersen, Jørgen E.;
Penner, Robert C.;
Stadler, Peter F.;
Nebel, Markus E.

Publication type:

Article

Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1068, doi. 10.1093/bioinformatics/btr085

By:

Kinsella, Marcus;
Harismendy, Olivier;
Nakano, Masakazu;
Frazer, Kelly A.;
Bafna, Vineet

Publication type:

Article

Topological entropy of DNA sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1061, doi. 10.1093/bioinformatics/btr077

By:

Koslicki, David

Publication type:

Article

Performance assessment of copy number microarray platforms using a spike-in experiment.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1052, doi. 10.1093/bioinformatics/btr106

By:

Halper-Stromberg, Eitan;
Frelin, Laurence;
Ruczinski, Ingo;
Scharpf, Robert;
Jie, Chunfa;
Carvalho, Benilton;
Hao, Haiping;
Hetrick, Kurt;
Jedlicka, Anne;
Dziedzic, Amanda;
Doheny, Kim;
Scott, Alan F.;
Baylin, Steve;
Pevsner, Jonathan;
Spencer, Forrest;
Irizarry, Rafael A.

Publication type:

Article

Assigning spectrum-specific P-values to protein identifications by mass spectrometry.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1128, doi. 10.1093/bioinformatics/btr089

By:

Spirin, Victor;
Shpunt, Alexander;
Seebacher, Jan;
Gentzel, Marc;
Shevchenko, Andrej;
Gygi, Steven;
Sunyaev, Shamil

Publication type:

Article

Defining an informativeness metric for clustering gene expression data.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1094, doi. 10.1093/bioinformatics/btr074

By:

Mar, Jessica C.;
Wells, Christine A.;
Quackenbush, John

Publication type:

Article

BiC: a web server for calculating bimodality of coexpression between gene and protein networks.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1174, doi. 10.1093/bioinformatics/btr086

By:

Linderman, George C.;
Patel, Vishal N.;
Chance, Mark R.;
Bebek, Gurkan

Publication type:

Article

R453Plus1Toolbox: an R/Bioconductor package for analyzing Roche 454 Sequencing data.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1162, doi. 10.1093/bioinformatics/btr102

By:

Klein, Hans-Ulrich;
Bartenhagen, Christoph;
Kohlmann, Alexander;
Grossmann, Vera;
Ruckert, Christian;
Haferlach, Torsten;
Dugas, Martin

Publication type:

Article

Interactive, multiscale navigation of large and complicated biological networks.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1121, doi. 10.1093/bioinformatics/btr083

By:

Praneenararat, Thanet;
Takagi, Toshihisa;
Iwasaki, Wataru

Publication type:

Article

SiGN-SSM: open source parallel software for estimating gene networks with state space models.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1172, doi. 10.1093/bioinformatics/btr078

By:

Tamada, Yoshinori;
Yamaguchi, Rui;
Imoto, Seiya;
Hirose, Osamu;
Yoshida, Ryo;
Nagasaki, Masao;
Miyano, Satoru

Publication type:

Article

FNV: light-weight flash-based network and pathway viewer.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1181, doi. 10.1093/bioinformatics/btr098

By:

Dannenfelser, Ruth;
Lachmann, Alexander;
Szenk, Mariola;
Ma'ayan, Avi

Publication type:

Article

ACT: aggregation and correlation toolbox for analyses of genome tracks.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1152, doi. 10.1093/bioinformatics/btr092

By:

Jee, Justin;
Rozowsky, Joel;
Yip, Kevin Y.;
Lochovsky, Lucas;
Bjornson, Robert;
Zhong, Guoneng;
Zhang, Zhengdong;
Fu, Yutao;
Wang, Jie;
Weng, Zhiping;
Gerstein, Mark

Publication type:

Article

Comments on ‘Bayesian variable selection for disease classification using gene expression data’.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1194, doi. 10.1093/bioinformatics/btr071

By:

Baragatti, Meïli C.;
Pommeret, Denys

Publication type:

Article

libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1166, doi. 10.1093/bioinformatics/btr084

By:

Kirchner, Marc;
Xu, Buote;
Steen, Hanno;
Steen, Judith A. J.

Publication type:

Article

ProtTest 3: fast selection of best-fit models of protein evolution.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1164, doi. 10.1093/bioinformatics/btr088

By:

Darriba, Diego;
Taboada, Guillermo L.;
Doallo, Ramón;
Posada, David

Publication type:

Article

A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1176, doi. 10.1093/bioinformatics/btr094

By:

Ahmad, Isthiaq;
Suits, Frank;
Hoekman, Berend;
Swertz, Morris A.;
Byelas, Heorhiy;
Dijkstra, Martijn;
Hooft, Rob;
Katsubo, Dmitry;
van Breukelen, Bas;
Bischoff, Rainer;
Horvatovich, Peter

Publication type:

Article

STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1170, doi. 10.1093/bioinformatics/btr068

By:

Klingbeil, Guido;
Erban, Radek;
Giles, Mike;
Maini, Philip K.

Publication type:

Article

Human variation database: an open-source database template for genomic discovery.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1155, doi. 10.1093/bioinformatics/btr100

By:

Fejes, Anthony P.;
Khodabakhshi, Alireza Hadj;
Birol, Inanc;
Jones, Steven J. M.

Publication type:

Article

Improving SNP discovery by base alignment quality.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1157

By:

Li, Heng

Publication type:

Article

eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1045, doi. 10.1093/bioinformatics/btr091

By:

Wang, Zhengkui;
Wang, Yue;
Tan, Kian-Lee;
Wong, Limsoon;
Agrawal, Divyakant

Publication type:

Article

Proteomics to go: Proteomatic enables the user-friendly creation of versatile MS/MS data evaluation workflows.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1183, doi. 10.1093/bioinformatics/btr081

By:

Specht, Michael;
Kuhlgert, Sebastian;
Fufezan, Christian;
Hippler, Michael

Publication type:

Article

AGRA: analysis of gene ranking algorithms.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1185, doi. 10.1093/bioinformatics/btr097

By:

Kocbek, Simon;
Sætre, Rune;
Stiglic, Gregor;
Kim, Jin-Dong;
Pernek, Igor;
Tsuruoka, Yoshimasa;
Kokol, Peter;
Ananiadou, Sophia;
Tsujii, Jun'ichi

Publication type:

Article

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1159, doi. 10.1093/bioinformatics/btr087

By:

Walters, William A.;
Caporaso, J. Gregory;
Lauber, Christian L.;
Berg-Lyons, Donna;
Fierer, Noah;
Knight, Rob

Publication type:

Article

eGOB: eukaryotic Gene Order Browser.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1150, doi. 10.1093/bioinformatics/btr075

By:

López, Marcela Dávila;
Samuelsson, Tore

Publication type:

Article

Gene List significance at-a-glance with GeneValorization.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1187, doi. 10.1093/bioinformatics/btr073

By:

Brancotte, Bryan;
Biton, Anne;
Bernard-Pierrot, Isabelle;
Radvanyi, François;
Reyal, Fabien;
Cohen-Boulakia, Sarah

Publication type:

Article

All-atom knowledge-based potential for RNA structure prediction and assessment.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1086, doi. 10.1093/bioinformatics/btr093

By:

Capriotti, Emidio;
Norambuena, Tomas;
Marti-Renom, Marc A.;
Melo, Francisco

Publication type:

Article

Automatically identifying and annotating mouse embryo gene expression patterns.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1101, doi. 10.1093/bioinformatics/btr105

By:

Han, Liangxiu;
van Hemert, Jano I.;
Baldock, Richard A.

Publication type:

Article

SurvJamda: an R package to predict patients' survival and risk assessment using joint analysis of microarray gene expression data.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1168, doi. 10.1093/bioinformatics/btr103

By:

Yasrebi, Haleh

Publication type:

Article

Connectedness of PPI network neighborhoods identifies regulatory hub proteins.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1135, doi. 10.1093/bioinformatics/btr099

By:

Fox, Andrew D.;
Hescott, Benjamin J.;
Blumer, Anselm C.;
Slonim, Donna K.

Publication type:

Article

Condensing biomedical journal texts through paragraph ranking.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1143, doi. 10.1093/bioinformatics/btr080

By:

Chiang, Jung-Hsien;
Liu, Heng-Hui;
Huang, Yi-Ting

Publication type:

Article