Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 7

Results: 34

SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 987, doi. 10.1093/bioinformatics/btr051

By:

Voss, Björn;
Hanselmann, Michael;
Renard, Bernhard Y.;
Lindner, Martin S.;
Köthe, Ullrich;
Kirchner, Marc;
Hamprecht, Fred A.

Publication type:

Article

fconv: format conversion, manipulation and feature computation of molecular data.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1021, doi. 10.1093/bioinformatics/btr055

By:

Neudert, Gerd;
Klebe, Gerhard

Publication type:

Article

PiNGO: a Cytoscape plugin to find candidate genes in biological networks.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1030, doi. 10.1093/bioinformatics/btr045

By:

Smoot, Michael;
Ono, Keiichiro;
Ideker, Trey;
Maere, Steven

Publication type:

Article

Conveyor: a workflow engine for bioinformatic analyses.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 903, doi. 10.1093/bioinformatics/btr040

By:

Linke, Burkhard;
Giegerich, Robert;
Goesmann, Alexander

Publication type:

Article

Bases adjacent to mononucleotide repeats show an increased single nucleotide polymorphism frequency in the human genome.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 895, doi. 10.1093/bioinformatics/btr067

By:

Siddle, K. J.;
Goodship, J. A.;
Keavney, B.;
Santibanez-Koref, M. F.

Publication type:

Article

BioGRID REST Service, BiogridPlugin2 and BioGRID WebGraph: new tools for access to interaction data at BioGRID.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1043, doi. 10.1093/bioinformatics/btr062

By:

Winter, Andrew G.;
Wildenhain, Jan;
Tyers, Mike

Publication type:

Article

Easyfig: a genome comparison visualizer.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1009, doi. 10.1093/bioinformatics/btr039

By:

Sullivan, Mitchell J.;
Petty, Nicola K.;
Beatson, Scott A.

Publication type:

Article

Automated analysis of biological oscillator models using mode decomposition.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 961, doi. 10.1093/bioinformatics/btr069

By:

Konopka, Tomasz

Publication type:

Article

GeneReporter—sequence-based document retrieval and annotation.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1034, doi. 10.1093/bioinformatics/btr047

By:

Bartsch, Annekathrin;
Bunk, Boyke;
Haddad, Isam;
Klein, Johannes;
Münch, Richard;
Johl, Thorsten;
Kärst, Uwe;
Jänsch, Lothar;
Jahn, Dieter;
Retter, Ida

Publication type:

Article

LSPR: an integrated periodicity detection algorithm for unevenly sampled temporal microarray data.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1023, doi. 10.1093/bioinformatics/btr041

By:

Yang, Rendong;
Zhang, Chen;
Su, Zhen

Publication type:

Article

A Ruby API to query the Ensembl database for genomic features.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1013, doi. 10.1093/bioinformatics/btr050

By:

Strozzi, Francesco;
Aerts, Jan

Publication type:

Article

FIMO: scanning for occurrences of a given motif.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1017, doi. 10.1093/bioinformatics/btr064

By:

Grant, Charles E.;
Bailey, Timothy L.;
Noble, William Stafford

Publication type:

Article

ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1039, doi. 10.1093/bioinformatics/btr054

By:

Tamiola, Kamil;
Mulder, Frans A. A.

Publication type:

Article

Modeling and comparing the organization of circular genomes.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 912, doi. 10.1093/bioinformatics/btr049

By:

Shieh, Grace S.;
Zheng, Shurong;
Johnson, Richard A.;
Chang, Yi-Feng;
Shimizu, Kunio;
Wang, Chia-Chang;
Tang, Sen-Lin

Publication type:

Article

Entropy-accelerated exact clustering of protein decoys.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 939, doi. 10.1093/bioinformatics/btr072

By:

Berenger, Francois;
Zhou, Yong;
Shrestha, Rojan;
Zhang, Kam Y. J.

Publication type:

Article

DDN: a caBIG® analytical tool for differential network analysis.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1036, doi. 10.1093/bioinformatics/btr052

By:

Zhang, Bai;
Tian, Ye;
Jin, Lu;
Li, Huai;
Shih, Ie-Ming;
Madhavan, Subha;
Clarke, Robert;
Hoffman, Eric P.;
Xuan, Jianhua;
Hilakivi-Clarke, Leena;
Wang, Yue

Publication type:

Article

GOSSIP: a method for fast and accurate global alignment of protein structures.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 925, doi. 10.1093/bioinformatics/btr044

By:

Kifer, I.;
Nussinov, R.;
Wolfson, H. J.

Publication type:

Article

A common layer of interoperability for biomedical ontologies based on OWL EL.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1001, doi. 10.1093/bioinformatics/btr058

By:

Hoehndorf, Robert;
Dumontier, Michel;
Oellrich, Anika;
Wimalaratne, Sarala;
Rebholz-Schuhmann, Dietrich;
Schofield, Paul;
Gkoutos, Georgios V.

Publication type:

Article

SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1028

By:

Zi, Zhike

Publication type:

Article

Gobe: an interactive, web-based tool for comparative genomic visualization.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1015, doi. 10.1093/bioinformatics/btr056

By:

Pedersen, Brent S.;
Tang, Haibao;
Freeling, Michael

Publication type:

Article

Cross-platform comparison of microarray data using order restricted inference.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 953, doi. 10.1093/bioinformatics/btr066

By:

Klinglmueller, Florian;
Tuechler, Thomas;
Posch, Martin

Publication type:

Article

SHRiMP2: Sensitive yet Practical Short Read Mapping.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1011, doi. 10.1093/bioinformatics/btr046

By:

David, Matei;
Dzamba, Misko;
Lister, Dan;
Ilie, Lucian;
Brudno, Michael

Publication type:

Article

HLA*IMP—an integrated framework for imputing classical HLA alleles from SNP genotypes.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 968, doi. 10.1093/bioinformatics/btr061

By:

Dilthey, Alexander T.;
Moutsianas, Loukas;
Leslie, Stephen;
McVean, Gil

Publication type:

Article

Flower: extracting information from pyrosequencing data.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1041, doi. 10.1093/bioinformatics/btr063

By:

Malde, Ketil

Publication type:

Article

GeneTUKit: a software for document-level gene normalization.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1032, doi. 10.1093/bioinformatics/btr042

By:

Huang, Minlie;
Liu, Jingchen;
Zhu, Xiaoyan

Publication type:

Article

Model annotation for synthetic biology: automating model to nucleotide sequence conversion.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 973, doi. 10.1093/bioinformatics/btr048

By:

Misirli, Goksel;
Hallinan, Jennifer S.;
Yu, Tommy;
Lawson, James R.;
Wimalaratne, Sarala M.;
Cooling, Michael T.;
Wipat, Anil

Publication type:

Article

tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1026, doi. 10.1093/bioinformatics/btr057

By:

Honkela, Antti;
Gao, Pei;
Ropponen, Jonatan;
Rattray, Magnus;
Lawrence, Neil D.

Publication type:

Article

Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 946, doi. 10.1093/bioinformatics/btr037

By:

Hafemeister, Christoph;
Costa, Ivan G.;
Schönhuth, Alexander;
Schliep, Alexander

Publication type:

Article

Annotating genes and genomes with DNA sequences extracted from biomedical articles.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 980, doi. 10.1093/bioinformatics/btr043

By:

Haeussler, Maximilian;
Gerner, Martin;
Bergman, Casey M.

Publication type:

Article

Phage display can select over-hydrophobic sequences that may impair prediction of natural domain–peptide interactions.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 899, doi. 10.1093/bioinformatics/btr060

By:

Luck, Katja;
Travé, Gilles

Publication type:

Article

Network clustering: probing biological heterogeneity by sparse graphical models.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 994, doi. 10.1093/bioinformatics/btr070

By:

Mukherjee, Sach;
Hill, Steven M.

Publication type:

Article

B2G-FAR, a species-centered GO annotation repository.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 919, doi. 10.1093/bioinformatics/btr059

By:

Götz, Stefan;
Arnold, Roland;
Sebastián-León, Patricia;
Martín-Rodríguez, Samuel;
Tischler, Patrick;
Jehl, Marc-André;
Dopazo, Joaquín;
Rattei, Thomas;
Conesa, Ana

Publication type:

Article

uMELT: prediction of high-resolution melting curves and dynamic melting profiles of PCR products in a rich web application.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 1019, doi. 10.1093/bioinformatics/btr065

By:

Dwight, Zachary;
Palais, Robert;
Wittwer, Carl T.

Publication type:

Article

FISH Finder: a high-throughput tool for analyzing FISH images.

Published in:

Bioinformatics, 2011, v. 27, n. 7, p. 933, doi. 10.1093/bioinformatics/btr053

By:

Shirley, James W.;
Ty, Sereyvathana;
Takebayashi, Shin-ichiro;
Liu, Xiuwen;
Gilbert, David M.

Publication type:

Article