Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 6

Results: 31

Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 865, doi. 10.1093/bioinformatics/btr032

By:

Edmonson, Michael N.;
Zhang, Jinghui;
Yan, Chunhua;
Finney, Richard P.;
Meerzaman, Daoud M.;
Buetow, Kenneth H.

Publication type:

Article

Computational inference of grammars for larger-than-gene structures from annotated gene sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 791, doi. 10.1093/bioinformatics/btr036

By:

Tsafnat, Guy;
Schaeffer, Jaron;
Clayphan, Andrew;
Iredell, Jon R.;
Partridge, Sally R.;
Coiera, Enrico

Publication type:

Article

Baking a mass-spectrometry data PIE with McMC and simulated annealing: predicting protein post-translational modifications from integrated top-down and bottom-up data.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 844, doi. 10.1093/bioinformatics/btr027

By:

Jefferys, Stuart R.;
Giddings, Morgan C.

Publication type:

Article

Identity-by-descent filtering of exome sequence data for disease–gene identification in autosomal recessive disorders.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 829, doi. 10.1093/bioinformatics/btr022

By:

Rödelsperger, Christian;
Krawitz, Peter;
Bauer, Sebastian;
Hecht, Jochen;
Bigham, Abigail W.;
Bamshad, Michael;
de Condor, Birgit Jonske;
Schweiger, Michal R.;
Robinson, Peter N.

Publication type:

Article

Biological assessment of robust noise models in microarray data analysis.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 807, doi. 10.1093/bioinformatics/btr018

By:

Posekany, A.;
Felsenstein, K.;
Sykacek, P.

Publication type:

Article

A novel hybrid gene prediction method employing protein multiple sequence alignments.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 757, doi. 10.1093/bioinformatics/btr010

By:

Keller, Oliver;
Kollmar, Martin;
Stanke, Mario;
Waack, Stephan

Publication type:

Article

HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 879, doi. 10.1093/bioinformatics/btr028

By:

Wang, Xin;
Terfve, Camille;
Rose, John C.;
Markowetz, Florian

Publication type:

Article

A method for identifying haplotypes carrying the causative allele in positive natural selection and genome-wide association studies.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 822, doi. 10.1093/bioinformatics/btr007

By:

Ong, Rick Twee-Hee;
Liu, Xuanyao;
Poh, Wan-Ting;
Sim, Xueling;
Chia, Kee-Seng;
Teo, Yik-Ying

Publication type:

Article

SpaCEM3: a software for biological module detection when data is incomplete, high dimensional and dependent.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 881, doi. 10.1093/bioinformatics/btr034

By:

Vignes, Matthieu;
Blanchet, Juliette;
Leroux, Damien;
Forbes, Florence

Publication type:

Article

Computational refinement of post-translational modifications predicted from tandem mass spectrometry.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 797, doi. 10.1093/bioinformatics/btr017

By:

Chung, Clement;
Liu, Jian;
Emili, Andrew;
Frey, Brendan J.

Publication type:

Article

Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 872, doi. 10.1093/bioinformatics/btr033

By:

Magis, Andrew T.;
Earls, John C.;
Ko, Youn-Hee;
Eddy, James A.;
Price, Nathan D.

Publication type:

Article

GPU accelerated biochemical network simulation.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 874, doi. 10.1093/bioinformatics/btr015

By:

Zhou, Yanxiang;
Liepe, Juliane;
Sheng, Xia;
Stumpf, Michael P. H.;
Barnes, Chris

Publication type:

Article

A k-mer scheme to predict piRNAs and characterize locust piRNAs.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 771, doi. 10.1093/bioinformatics/btr016

By:

Zhang, Yi;
Wang, Xianhui;
Kang, Le

Publication type:

Article

A greedy, graph-based algorithm for the alignment of multiple homologous gene lists.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 749, doi. 10.1093/bioinformatics/btr008

By:

Fostier, Jan;
Proost, Sebastian;
Dhoedt, Bart;
Saeys, Yvan;
Demeester, Piet;
Van de Peer, Yves;
Vandepoele, Klaas

Publication type:

Article

OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 883, doi. 10.1093/bioinformatics/btr035

By:

Hao, Yanqi;
Merkoulovitch, Anna;
Vlasblom, James;
Pu, Shuye;
Turinsky, Andrei L.;
Roudeva, Denitza;
Turner, Brian;
Greenblatt, Jack;
Wodak, Shoshana J.

Publication type:

Article

CNAmet: an R package for integrating copy number, methylation and expression data.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 887, doi. 10.1093/bioinformatics/btr019

By:

Louhimo, Riku;
Hautaniemi, Sampsa

Publication type:

Article

PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 877, doi. 10.1093/bioinformatics/btr023

By:

Xiong, Xuejian;
Song, Hongyan;
On, Tuan;
Lochovsky, Lucas;
Provart, Nicholas J.;
Parkinson, John

Publication type:

Article

Quantitative trait prediction based on genetic marker-array data, a simulation study.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 745, doi. 10.1093/bioinformatics/btr024

By:

Yip, Wai-ki;
Lange, Christoph

Publication type:

Article

Dalliance: interactive genome viewing on the web.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 889, doi. 10.1093/bioinformatics/btr020

By:

Down, Thomas A.;
Piipari, Matias;
Hubbard, Tim J. P.

Publication type:

Article

A pipeline for RNA-seq data processing and quality assessment.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 867, doi. 10.1093/bioinformatics/btr012

By:

Goncalves, Angela;
Tikhonov, Andrew;
Brazma, Alvis;
Kapushesky, Misha

Publication type:

Article

Compression of DNA sequence reads in FASTQ format.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 860, doi. 10.1093/bioinformatics/btr014

By:

Deorowicz, Sebastian;
Grabowski, Szymon

Publication type:

Article

Efficient simulation under a population genetics model of carcinogenesis.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 837, doi. 10.1093/bioinformatics/btr025

By:

Zhu, Tianqi;
Hu, Yucheng;
Ma, Zhi-Ming;
Zhang, De-Xing;
Li, Tiejun;
Yang, Ziheng

Publication type:

Article

Improved side-chain modeling by coupling clash-detection guided iterative search with rotamer relaxation.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 785, doi. 10.1093/bioinformatics/btr009

By:

Cao, Yang;
Song, Lin;
Miao, Zhichao;
Hu, Yun;
Tian, Liqing;
Jiang, Taijiao

Publication type:

Article

The CCPN Metabolomics Project: a fast protocol for metabolite identification by 2D-NMR.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 885, doi. 10.1093/bioinformatics/btr013

By:

Chignola, Francesca;
Mari, Silvia;
Stevens, Tim J.;
Fogh, Rasmus H.;
Mannella, Valeria;
Boucher, Wayne;
Musco, Giovanna

Publication type:

Article

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 764

By:

Marçais, Guillaume;
Kingsford, Carl

Publication type:

Article

Automated validation of genetic variants from large databases: ensuring that variant references refer to the same genomic locations.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 891, doi. 10.1093/bioinformatics/btr029

By:

Tong, Mark Y.;
Cassa, Christopher A.;
Kohane, Isaac S.

Publication type:

Article

Modular analysis of the probabilistic genetic interaction network.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 853, doi. 10.1093/bioinformatics/btr031

By:

Hou, Lin;
Wang, Lin;
Qian, Minping;
Li, Dong;
Tang, Chao;
Zhu, Yunping;
Deng, Minghua;
Li, Fangting

Publication type:

Article

High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 777, doi. 10.1093/bioinformatics/btr021

By:

Wang, Yejun;
Zhang, Qing;
Sun, Ming-an;
Guo, Dianjing

Publication type:

Article

Identifying dispersed epigenomic domains from ChIP-Seq data.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 870, doi. 10.1093/bioinformatics/btr030

By:

Song, Qiang;
Smith, Andrew D.

Publication type:

Article

Quality control and preprocessing of metagenomic datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 863, doi. 10.1093/bioinformatics/btr026

By:

Schmieder, Robert;
Edwards, Robert

Publication type:

Article

Robust linear regression methods in association studies.

Published in:

Bioinformatics, 2011, v. 27, n. 6, p. 815

By:

Lourenço, V. M.;
Pires, A. M.;
Kirst, M.

Publication type:

Article