Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 5

Results: 30

AGE: defining breakpoints of genomic structural variants at single-nucleotide resolution, through optimal alignments with gap excision.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 595, doi. 10.1093/bioinformatics/btq713

By:

Abyzov, Alexej;
Gerstein, Mark

Publication type:

Article

A sub-pathway-based approach for identifying drug response principal network.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 649, doi. 10.1093/bioinformatics/btq714

By:

Chen, Xiujie;
Xu, Jiankai;
Huang, Bangqing;
Li, Jin;
Wu, Xin;
Ma, Ling;
Jia, Xiaodong;
Bian, Xiusen;
Tan, Fujian;
Liu, Lei;
Chen, Sheng;
Li, Xia

Publication type:

Article

Wave-spec: a preprocessing package for mass spectrometry data.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 739, doi. 10.1093/bioinformatics/btq724

By:

Li, Ming;
Chen, Shuo;
Zhang, Joan;
Chen, Heidi;
Shyr, Yu

Publication type:

Article

BayesPeak—an R package for analysing ChIP-seq data.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 713, doi. 10.1093/bioinformatics/btq685

By:

Cairns, Jonathan;
Spyrou, Christiana;
Stark, Rory;
Smith, Mike L.;
Lynch, Andy G.;
Tavaré, Simon

Publication type:

Article

HiSpOD: probe design for functional DNA microarrays.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 641, doi. 10.1093/bioinformatics/btq712

By:

Dugat-Bony, Eric;
Missaoui, Mohieddine;
Peyretaillade, Eric;
Biderre-Petit, Corinne;
Bouzid, Ourdia;
Gouinaud, Christophe;
Hill, David;
Peyret, Pierre

Publication type:

Article

MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 725, doi. 10.1093/bioinformatics/btq710

By:

Baron, Daniel;
Bihouée, Audrey;
Teusan, Raluca;
Dubois, Emeric;
Savagner, Frédérique;
Steenman, Marja;
Houlgatte, Rémi;
Ramstein, Gérard

Publication type:

Article

Identifying viral integration sites using SeqMap 2.0.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 720, doi. 10.1093/bioinformatics/btq722

By:

Hawkins, Troy B.;
Dantzer, Jessica;
Peters, Brandon;
Dinauer, Mary;
Mockaitis, Keithanne;
Mooney, Sean;
Cornetta, Kenneth

Publication type:

Article

Length bias correction for RNA-seq data in gene set analyses.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 662, doi. 10.1093/bioinformatics/btr005

By:

Gao, Liyan;
Fang, Zhide;
Zhang, Kui;
Zhi, Degui;
Cui, Xiangqin

Publication type:

Article

A novel method for assigning functional linkages to proteins using enhanced phylogenetic trees.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 700, doi. 10.1093/bioinformatics/btq705

By:

Ta, Hung Xuan;
Koskinen, Patrik;
Holm, Liisa

Publication type:

Article

CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 715, doi. 10.1093/bioinformatics/btq707

By:

Kuttippurathu, Lakshmi;
Hsing, Michael;
Liu, Yongchao;
Schmidt, Bertil;
Maskell, Douglas L.;
Lee, Kyungjoon;
He, Aibin;
Pu, William T.;
Kong, Sek Won

Publication type:

Article

An efficient hierarchical generalized linear mixed model for pathway analysis of genome-wide association studies.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 686, doi. 10.1093/bioinformatics/btq728

By:

Wang, Lily;
Jia, Peilin;
Wolfinger, Russell D.;
Chen, Xi;
Grayson, Britney L.;
Aune, Thomas M.;
Zhao, Zhongming

Publication type:

Article

Recovering key biological constituents through sparse representation of gene expression.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 655, doi. 10.1093/bioinformatics/btr002

By:

Prat, Yosef;
Fromer, Menachem;
Linial, Nathan;
Linial, Michal

Publication type:

Article

A Java API for working with PubChem datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 741, doi. 10.1093/bioinformatics/btq715

By:

Southern, Mark R.;
Griffin, Patrick R.

Publication type:

Article

Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 626, doi. 10.1093/bioinformatics/btq726

By:

Xu, Zhenjiang;
Mathews, David H.

Publication type:

Article

Multi-level mixed effects models for bead arrays.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 633, doi. 10.1093/bioinformatics/btq708

By:

Kim, Ryung S.;
Lin, Juan

Publication type:

Article

A Bayesian approach for estimating calibration curves and unknown concentrations in immunoassays.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 707, doi. 10.1093/bioinformatics/btq686

By:

Feng, Feng;
Sales, Ana Paula;
Kepler, Thomas B.

Publication type:

Article

Tabix: fast retrieval of sequence features from generic TAB-delimited files.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 718

By:

Li, Heng

Publication type:

Article

flowPhyto: enabling automated analysis of microscopic algae from continuous flow cytometric data.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 732, doi. 10.1093/bioinformatics/btr003

By:

Ribalet, Francois;
Schruth, David M.;
Armbrust, E. Virginia

Publication type:

Article

PUGSVM: a caBIGTM analytical tool for multiclass gene selection and predictive classification.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 736, doi. 10.1093/bioinformatics/btq721

By:

Yu, Guoqiang;
Li, Huai;
Ha, Sook;
Shih, Ie−Ming;
Clarke, Robert;
Hoffman, Eric P.;
Madhavan, Subha;
Xuan, Jianhua;
Wang, Yue

Publication type:

Article

Automated bond order assignment as an optimization problem.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 619, doi. 10.1093/bioinformatics/btq718

By:

Dehof, Anna Katharina;
Rurainski, Alexander;
Bui, Quang Bao Anh;
Böcker, Sebastian;
Lenhof, Hans-Peter;
Hildebrandt, Andreas

Publication type:

Article

The Physiome Model Repository 2.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 743

By:

Yu, Tommy;
Lloyd, Catherine M.;
Nickerson, David P.;
Cooling, Michael T.;
Miller, Andrew K.;
Garny, Alan;
Terkildsen, Jonna R.;
Lawson, James;
Britten, Randall D.;
Hunter, Peter J.;
Nielsen, Poul M. F.

Publication type:

Article

R/mpMap: a computational platform for the genetic analysis of multiparent recombinant inbred lines.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 727, doi. 10.1093/bioinformatics/btq719

By:

Huang, B. Emma;
George, Andrew W.

Publication type:

Article

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 611, doi. 10.1093/bioinformatics/btq725

By:

Hao, Xiaolin;
Jiang, Rui;
Chen, Ting

Publication type:

Article

Adjustment for local ancestry in genetic association analysis of admixed populations.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 670, doi. 10.1093/bioinformatics/btq709

By:

Wang, Xuexia;
Zhu, Xiaofeng;
Qin, Huaizhen;
Cooper, Richard S.;
Ewens, Warren J.;
Li, Chun;
Li, Mingyao

Publication type:

Article

MIRACH: efficient model checker for quantitative biological pathway models.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 734, doi. 10.1093/bioinformatics/btq727

By:

Koh, Chuan Hock;
Nagasaki, Masao;
Saito, Ayumu;
Li, Chen;
Wong, Limsoon;
Miyano, Satoru

Publication type:

Article

Improvements in the reconstruction of time-varying gene regulatory networks: dynamic programming and regularization by information sharing among genes.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 693, doi. 10.1093/bioinformatics/btq711

By:

Grzegorczyk, Marco;
Husmeier, Dirk

Publication type:

Article

Model selection in Bayesian segmentation of multiple DNA alignments.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 604, doi. 10.1093/bioinformatics/btq716

By:

Oldmeadow, Christopher;
Keith, Jonathan M.

Publication type:

Article

Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 723, doi. 10.1093/bioinformatics/btq720

By:

Olechnovič, Kliment;
Margelevičius, Mindaugas;
Venclovas, Česlovas

Publication type:

Article

DiNAMIC: a method to identify recurrent DNA copy number aberrations in tumors.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 678, doi. 10.1093/bioinformatics/btq717

By:

Walter, Vonn;
Nobel, Andrew B.;
Wright, Fred A.

Publication type:

Article

MBRole: enrichment analysis of metabolomic data.

Published in:

Bioinformatics, 2011, v. 27, n. 5, p. 730, doi. 10.1093/bioinformatics/btr001

By:

Chagoyen, Monica;
Pazos, Florencio

Publication type:

Article