Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 24

Results: 21

An automatic method for CASP9 free modeling structure prediction assessment.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3371, doi. 10.1093/bioinformatics/btr572

By:

Cong, Qian;
Kinch, Lisa N.;
Pei, Jimin;
Shi, Shuoyong;
Grishin, Vyacheslav N.;
Li, Wenlin;
Grishin, Nick V.

Publication type:

Article

Optimized application of penalized regression methods to diverse genomic data.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3399, doi. 10.1093/bioinformatics/btr591

By:

Waldron, Levi;
Pintilie, Melania;
Tsao, Ming-Sound;
Shepherd, Frances A.;
Huttenhower, Curtis;
Jurisica, Igor

Publication type:

Article

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3333, doi. 10.1093/bioinformatics/btr570

By:

Althammer, Sonja;
González-Vallinas, Juan;
Ballaré, Cecilia;
Beato, Miguel;
Eyras, Eduardo

Publication type:

Article

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq).

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3435, doi. 10.1093/bioinformatics/btr589

By:

Kofler, Robert;
Pandey, Ram Vinay;
Schlötterer, Christian

Publication type:

Article

Predicting residue–residue contacts using random forest models.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3379, doi. 10.1093/bioinformatics/btr579

By:

Li, Yunqi;
Fang, Yaping;
Fang, Jianwen

Publication type:

Article

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3423, doi. 10.1093/bioinformatics/btr539

By:

Dale, Ryan K.;
Pedersen, Brent S.;
Quinlan, Aaron R.

Publication type:

Article

Enrich: software for analysis of protein function by enrichment and depletion of variants.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3430, doi. 10.1093/bioinformatics/btr577

By:

Fowler, Douglas M.;
Araya, Carlos L.;
Gerard, Wayne;
Fields, Stanley

Publication type:

Article

Mapping personal functional data to personal genomes.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3427, doi. 10.1093/bioinformatics/btr578

By:

Rivas-Astroza, Marcelo;
Xie, Dan;
Cao, Xiaoyi;
Zhong, Sheng

Publication type:

Article

A system-level approach for deciphering the transcriptional response to prion infection.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3407, doi. 10.1093/bioinformatics/btr580

By:

Zampieri, Mattia;
Legname, Giuseppe;
Segrè, Daniel;
Altafini, Claudio

Publication type:

Article

MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3341, doi. 10.1093/bioinformatics/btr583

By:

Wang, Tse-Yi;
Su, Chien-Hao;
Tsai, Huai-Kuang

Publication type:

Article

BDTcomparator: a program for comparing binary classifiers.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3439, doi. 10.1093/bioinformatics/btr574

By:

Fijorek, Kamil;
Fijorek, Damian;
Wisniowska, Barbara;
Polak, Sebastian

Publication type:

Article

Cascade detection for the extraction of localized sequence features; specificity results for HIV-1 protease and structure–function results for the Schellman loop.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3415, doi. 10.1093/bioinformatics/btr594

By:

Newell, Nicholas E.

Publication type:

Article

KABOOM! A new suffix array based algorithm for clustering expression data.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3348, doi. 10.1093/bioinformatics/btr560

By:

Hazelhurst, Scott;
Lipták, Zsuzsanna

Publication type:

Article

BioPAX support in CellDesigner.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3437, doi. 10.1093/bioinformatics/btr586

By:

Mi, Huaiyu;
Muruganujan, Anushya;
Demir, Emek;
Matsuoka, Yukiko;
Funahashi, Akira;
Kitano, Hiroaki;
Thomas, Paul D.

Publication type:

Article

STRIKE: evaluation of protein MSAs using a single 3D structure.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3385, doi. 10.1093/bioinformatics/btr587

By:

Kemena, Carsten;
Taly, Jean-Francois;
Kleinjung, Jens;
Notredame, Cedric

Publication type:

Article

VizPrimer: a web server for visualized PCR primer design based on known gene structure.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3432, doi. 10.1093/bioinformatics/btr582

By:

Zhou, Yang;
Qu, Wubin;
Lu, Yiming;
Zhang, Yanchun;
Wang, Xiaolei;
Zhao, Dongsheng;
Yang, Yi;
Zhang, Chenggang

Publication type:

Article

The rise and fall of supervised machine learning techniques.

Published in:

2011

By:

Jensen, Lars Juhl;
Bateman, Alex

Publication type:

Editorial

An assessment of substitution scores for protein profile–profile comparison.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3356, doi. 10.1093/bioinformatics/btr565

By:

Ye, Xugang;
Wang, Guoli;
Altschul, Stephen F.

Publication type:

Article

Visualization and quality assessment of de novo genome assemblies.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3425, doi. 10.1093/bioinformatics/btr569

By:

Riba-Grognuz, Oksana;
Keller, Laurent;
Falquet, Laurent;
Xenarios, Ioannis;
Wurm, Yannick

Publication type:

Article

The design of optimal therapeutic small interfering RNA molecules targeting diverse strains of influenza A virus.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3364, doi. 10.1093/bioinformatics/btr555

By:

ElHefnawi, Mahmoud;
Hassan, Nafisa;
Kamar, Mona;
Siam, Rania;
Remoli, Anna Lisa;
El-Azab, Iman;
AlAidy, Osama;
Marsili, Giulia;
Sgarbanti, Marco

Publication type:

Article

Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank.

Published in:

Bioinformatics, 2011, v. 27, n. 24, p. 3392, doi. 10.1093/bioinformatics/btr590

By:

Joosten, Robbie P.;
Joosten, Krista;
Cohen, Serge X.;
Vriend, Gert;
Perrakis, Anastassis

Publication type:

Article