RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 281, doi. 10.1093/bioinformatics/btq643
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- Publication type:
- Article
Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 2
Results: 28
1
2
GimmeMotifs: a de novo motif prediction pipeline for ChIP-sequencing experiments.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 270, doi. 10.1093/bioinformatics/btq636
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- Publication type:
- Article
3
Real-world comparison of CPU and GPU implementations of SNPrank: a network analysis tool for GWAS.
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- Bioinformatics, 2011, v. 27, n. 2, p. 284, doi. 10.1093/bioinformatics/btq638
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- Publication type:
- Article
4
Fast and efficient dynamic nested effects models.
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- Bioinformatics, 2011, v. 27, n. 2, p. 238, doi. 10.1093/bioinformatics/btq631
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- Publication type:
- Article
5
Scoring-and-unfolding trimmed tree assembler: concepts, constructs and comparisons.
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- Bioinformatics, 2011, v. 27, n. 2, p. 153, doi. 10.1093/bioinformatics/btq646
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- Publication type:
- Article
6
Analyzing marginal cases in differential shotgun proteomics.
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- Bioinformatics, 2011, v. 27, n. 2, p. 275, doi. 10.1093/bioinformatics/btq632
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- Publication type:
- Article
7
The uniqueome: a mappability resource for short-tag sequencing.
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- Bioinformatics, 2011, v. 27, n. 2, p. 272, doi. 10.1093/bioinformatics/btq640
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- Publication type:
- Article
8
Evolutionary design principles and functional characteristics based on kingdom-specific network motifs.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 245, doi. 10.1093/bioinformatics/btq633
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- Publication type:
- Article
9
Efficient change point detection for genomic sequences of continuous measurements.
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- Bioinformatics, 2011, v. 27, n. 2, p. 161, doi. 10.1093/bioinformatics/btq647
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- Publication type:
- Article
10
PE-Assembler: de novo assembler using short paired-end reads.
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- Bioinformatics, 2011, v. 27, n. 2, p. 167, doi. 10.1093/bioinformatics/btq626
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- Publication type:
- Article
11
Improving structure alignment-based prediction of SCOP families using Vorolign Kernels.
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- Bioinformatics, 2011, v. 27, n. 2, p. 204, doi. 10.1093/bioinformatics/btq618
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- Publication type:
- Article
12
Predicting in vitro drug sensitivity using Random Forests.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 220, doi. 10.1093/bioinformatics/btq628
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- Publication type:
- Article
13
Inference of gene networks—application to Bifidobacterium.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 232, doi. 10.1093/bioinformatics/btq629
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- Publication type:
- Article
14
Identifying cancer driver genes in tumor genome sequencing studies.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 175, doi. 10.1093/bioinformatics/btq630
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- Publication type:
- Article
15
A hybrid approach to extract protein–protein interactions.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 259, doi. 10.1093/bioinformatics/btq620
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- Publication type:
- Article
16
PriSM: a primer selection and matching tool for amplification and sequencing of viral genomes.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 266, doi. 10.1093/bioinformatics/btq624
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- Publication type:
- Article
17
Accelerating reaction–diffusion simulations with general-purpose graphics processing units.
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- Bioinformatics, 2011, v. 27, n. 2, p. 288, doi. 10.1093/bioinformatics/btq622
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- Publication type:
- Article
18
PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 211, doi. 10.1093/bioinformatics/btq634
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- Publication type:
- Article
19
TE Displayer for post-genomic analysis of transposable elements.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 286, doi. 10.1093/bioinformatics/btq639
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- Publication type:
- Article
20
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 268, doi. 10.1093/bioinformatics/btq635
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- Publication type:
- Article
21
Prognostic transcriptional association networks: a new supervised approach based on regression trees.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 252, doi. 10.1093/bioinformatics/btq645
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- Publication type:
- Article
22
Differential effects of chromatin regulators and transcription factors on gene regulation: a nucleosomal perspective.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 147, doi. 10.1093/bioinformatics/btq637
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- Publication type:
- Article
23
GPU-BLAST: using graphics processors to accelerate protein sequence alignment.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 182, doi. 10.1093/bioinformatics/btq644
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- Publication type:
- Article
24
MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 196, doi. 10.1093/bioinformatics/btq649
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- Publication type:
- Article
25
PLEXY: efficient target prediction for box C/D snoRNAs.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 279, doi. 10.1093/bioinformatics/btq642
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- Publication type:
- Article
26
SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 277, doi. 10.1093/bioinformatics/btq641
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- Publication type:
- Article
27
Anatomy of a hash-based long read sequence mapping algorithm for next generation DNA sequencing.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 189, doi. 10.1093/bioinformatics/btq648
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- Publication type:
- Article
28
SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures.
- Published in:
- Bioinformatics, 2011, v. 27, n. 2, p. 225, doi. 10.1093/bioinformatics/btq650
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- Publication type:
- Article