Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 19

Results: 27

NetDS: a Cytoscape plugin to analyze the robustness of dynamics and feedforward/feedback loop structures of biological networks.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2767, doi. 10.1093/bioinformatics/btr466

By:

Le, Duc-Hau;
Kwon, Yung-Keun

Publication type:

Article

Penalized regression elucidates aberration hotspots mediating subtype-specific transcriptional responses in breast cancer.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2679, doi. 10.1093/bioinformatics/btr450

By:

Yuan, Yinyin;
Rueda, Oscar M.;
Curtis, Christina;
Markowetz, Florian

Publication type:

Article

Automatic extraction of angiogenesis bioprocess from text.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2730, doi. 10.1093/bioinformatics/btr460

By:

Wang, Xinglong;
McKendrick, Iain;
Barrett, Ian;
Dix, Ian;
French, Tim;
Tsujii, Jun'ichi;
Ananiadou, Sophia

Publication type:

Article

Inferring disease and gene set associations with rank coherence in networks.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2692, doi. 10.1093/bioinformatics/btr463

By:

Hwang, TaeHyun;
Zhang, Wei;
Xie, Maoqiang;
Liu, Jinfeng;
Kuang, Rui

Publication type:

Article

coMOTIF: a mixture framework for identifying transcription factor and a coregulator motif in ChIP-seq Data.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2625, doi. 10.1093/bioinformatics/btr397

By:

Xu, Mengyuan;
Weinberg, Clarice R.;
Umbach, David M.;
Li, Leping

Publication type:

Article

Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2648, doi. 10.1093/bioinformatics/btr462

By:

Sathirapongsasuti, Jarupon Fah;
Lee, Hane;
Horst, Basil A. J.;
Brunner, Georg;
Cochran, Alistair J.;
Binder, Scott;
Quackenbush, John;
Nelson, Stanley F.

Publication type:

Article

A biclustering algorithm for extracting bit-patterns from binary datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2738, doi. 10.1093/bioinformatics/btr464

By:

Rodriguez-Baena, Domingo S.;
Perez-Pulido, Antonio J.;
Aguilar−Ruiz, Jesus S.

Publication type:

Article

A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2621, doi. 10.1093/bioinformatics/btr453

By:

Kulakovskiy, I. V.;
Belostotsky, A. A.;
Kasianov, A. S.;
Esipova, N. G.;
Medvedeva, Y. A.;
Eliseeva, I. A.;
Makeev, V. J.

Publication type:

Article

Large-scale dynamic gene regulatory network inference combining differential equation models with local dynamic Bayesian network analysis.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2686, doi. 10.1093/bioinformatics/btr454

By:

Li, Zheng;
Li, Ping;
Krishnan, Arun;
Liu, Jingdong

Publication type:

Article

NeuroPedia: neuropeptide database and spectral library.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2772, doi. 10.1093/bioinformatics/btr445

By:

Kim, Yoona;
Bark, Steven;
Hook, Vivian;
Bandeira, Nuno

Publication type:

Article

Robust synthetic gene network design via library-based search method.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2700, doi. 10.1093/bioinformatics/btr465

By:

Wu, Chih-Hung;
Lee, Hsiao-Ching;
Chen, Bor-Sen

Publication type:

Article

Metannogen: annotation of biological reaction networks.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2763, doi. 10.1093/bioinformatics/btr456

By:

Gille, Christoph;
Hübner, Katrin;
Hoppe, Andreas;
Holzhütter, Hermann−Georg

Publication type:

Article

A powerful and flexible approach to the analysis of RNA sequence count data.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2672, doi. 10.1093/bioinformatics/btr449

By:

Zhou, Yi-Hui;
Xia, Kai;
Wright, Fred A.

Publication type:

Article

A phylogenetic mixture model for the identification of functionally divergent protein residues.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2655, doi. 10.1093/bioinformatics/btr470

By:

Gaston, Daniel;
Susko, Edward;
Roger, Andrew J.

Publication type:

Article

The GNAT library for local and remote gene mention normalization.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2769, doi. 10.1093/bioinformatics/btr455

By:

Hakenberg, Jörg;
Gerner, Martin;
Haeussler, Maximilian;
Solt, Illés;
Plake, Conrad;
Schroeder, Michael;
Gonzalez, Graciela;
Nenadic, Goran;
Bergman, Casey M.

Publication type:

Article

A framework for analytical characterization of monoclonal antibodies based on reactivity profiles in different tissues.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2746, doi. 10.1093/bioinformatics/btr468

By:

Rossin, Elizabeth;
Lin, Tsung-I;
Ho, Hsiu J.;
Mentzer, Steven J.;
Pyne, Saumyadipta

Publication type:

Article

ReplacementMatrix: a web server for maximum-likelihood estimation of amino acid replacement rate matrices.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2758, doi. 10.1093/bioinformatics/btr435

By:

Dang, Cuong Cao;
Lefort, Vincent;
Le, Vinh Sy;
Le, Quang Si;
Gascuel, Olivier

Publication type:

Article

Tree-structured algorithm for long weak motif discovery.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2641, doi. 10.1093/bioinformatics/btr459

By:

Sun, He Quan;
Low, Malcolm Yoke Hean;
Hsu, Wen Jing;
Tan, Ching Wai;
Rajapakse, Jagath C.

Publication type:

Article

Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2714

By:

Mäkelä, Jarno;
Huttunen, Heikki;
Kandhavelu, Meenakshisundaram;
Yli-Harja, Olli;
Ribeiro, Andre S.

Publication type:

Article

GlobalMIT: learning globally optimal dynamic bayesian network with the mutual information test criterion.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2765, doi. 10.1093/bioinformatics/btr457

By:

Vinh, Nguyen Xuan;
Chetty, Madhu;
Coppel, Ross;
Wangikar, Pramod P.

Publication type:

Article

Reconstructing the architecture of the ancestral amniote genome.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2664, doi. 10.1093/bioinformatics/btr461

By:

Ouangraoua, Aïda;
Tannier, Eric;
Chauve, Cedric

Publication type:

Article

JMassBalance: mass-balanced randomization and analysis of metabolic networks.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2761, doi. 10.1093/bioinformatics/btr448

By:

Basler, Georg;
Nikoloski, Zoran

Publication type:

Article

OrganismTagger: detection, normalization and grounding of organism entities in biomedical documents.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2721, doi. 10.1093/bioinformatics/btr452

By:

Naderi, Nona;
Kappler, Thomas;
Baker, Christopher J. O.;
Witte, René

Publication type:

Article

FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2633, doi. 10.1093/bioinformatics/btr458

By:

Singh, Darshan;
Orellana, Christian F.;
Hu, Yin;
Jones, Corbin D.;
Liu, Yufeng;
Chiang, Derek Y.;
Liu, Jinze;
Prins, Jan F.

Publication type:

Article

Contextual analysis of RNAi-based functional screens using interaction networks.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2707, doi. 10.1093/bioinformatics/btr469

By:

Gonzalez, Orland;
Zimmer, Ralf

Publication type:

Article

Mauve Assembly Metrics.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2756, doi. 10.1093/bioinformatics/btr451

By:

Darling, Aaron E.;
Tritt, Andrew;
Eisen, Jonathan A.;
Facciotti, Marc T.

Publication type:

Article

Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2754, doi. 10.1093/bioinformatics/btr442

By:

Ramirez-Gonzalez, Ricardo;
Caccamo, Mario;
MacLean, Daniel

Publication type:

Article