Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 18

Results: 26

Stage prediction of embryonic stem cell differentiation from genome-wide expression data.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2546, doi. 10.1093/bioinformatics/btr422

By:

Zagar, Lan;
Mulas, Francesca;
Garagna, Silvia;
Zuccotti, Maurizio;
Bellazzi, Riccardo;
Zupan, Blaz

Publication type:

Article

PDBpaint, a visualization webservice to tag protein structures with sequence annotations.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2605, doi. 10.1093/bioinformatics/btr419

By:

Fournier, David;
Andrade-Navarro, Miguel A.

Publication type:

Article

Estimating classification probabilities in high-dimensional diagnostic studies.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2563, doi. 10.1093/bioinformatics/btr434

By:

Appel, Inka J.;
Gronwald, Wolfram;
Spang, Rainer

Publication type:

Article

ContEst: estimating cross-contamination of human samples in next-generation sequencing data.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2601, doi. 10.1093/bioinformatics/btr446

By:

Cibulskis, Kristian;
McKenna, Aaron;
Fennell, Tim;
Banks, Eric;
DePristo, Mark;
Getz, Gad

Publication type:

Article

Alignment of distantly related protein structures: algorithm, bound and implications to homology modeling.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2537, doi. 10.1093/bioinformatics/btr432

By:

Wang, Sheng;
Peng, Jian;
Xu, Jinbo

Publication type:

Article

GaggleBridge: collaborative data analysis.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2612, doi. 10.1093/bioinformatics/btr429

By:

Battke, Florian;
Symons, Stephan;
Herbig, Alexander;
Nieselt, Kay

Publication type:

Article

GenSSI: a software toolbox for structural identifiability analysis of biological models.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2610, doi. 10.1093/bioinformatics/btr431

By:

Chiş, Oana;
Banga, Julio R.;
Balsa-Canto, Eva

Publication type:

Article

A powerful approach for association analysis incorporating imprinting effects.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2571, doi. 10.1093/bioinformatics/btr443

By:

Xia, Fan;
Zhou, Ji-Yuan;
Fung, Wing Kam

Publication type:

Article

Integration of gene normalization stages and co-reference resolution using a Markov logic network.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2586, doi. 10.1093/bioinformatics/btr358

By:

Dai, Hong-Jie;
Chang, Yen−Ching;
Tsai, Richard Tzong-Han;
Hsu, Wen−Lian

Publication type:

Article

Dasty3, a WEB framework for DAS.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2616, doi. 10.1093/bioinformatics/btr433

By:

Villaveces, Jose M.;
Jimenez, Rafael C.;
Garcia, Leyla J.;
Salazar, Gustavo A.;
Gel, Bernat;
Mulder, Nicola;
Martin, Maria;
Garcia, Alexander;
Hermjakob, Henning

Publication type:

Article

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2518, doi. 10.1093/bioinformatics/btr427

By:

Grant, Gregory R.;
Farkas, Michael H.;
Pizarro, Angel D.;
Lahens, Nicholas F.;
Schug, Jonathan;
Brunk, Brian P.;
Stoeckert, Christian J.;
Hogenesch, John B.;
Pierce, Eric A.

Publication type:

Article

Identifying disease-associated SNP clusters via contiguous outlier detection.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2578, doi. 10.1093/bioinformatics/btr424

By:

Yang, Can;
Zhou, Xiaowei;
Wan, Xiang;
Yang, Qiang;
Xue, Hong;
Yu, Weichuan

Publication type:

Article

CalcTav—integration of a spreadsheet and Taverna workbench.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2618, doi. 10.1093/bioinformatics/btr425

By:

Sroka, Jacek;
Krupa, Łukasz;
Kierzek, Andrzej M.;
Tyszkiewicz, Jerzy

Publication type:

Article

Identification of novel phosphorylation modification sites in human proteins that originated after the human–chimpanzee divergence.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2494, doi. 10.1093/bioinformatics/btr426

By:

Kim, Dong Seon;
Hahn, Yoonsoo

Publication type:

Article

A dynamic programming algorithm for identification of triplex-forming sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2510, doi. 10.1093/bioinformatics/btr439

By:

Lexa, Matej;
Martínek, Tomáš;
Burgetová, Ivana;
Kopeček, Daniel;
Brázdová, Marie

Publication type:

Article

Inferring statin-induced gene regulatory relationships in primary human hepatocytes.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2473, doi. 10.1093/bioinformatics/btr416

By:

Schröder, Adrian;
Wollnik, Johannes;
Wrzodek, Clemens;
Dräger, Andreas;
Bonin, Michael;
Burk, Oliver;
Thomas, Maria;
Thasler, Wolfgang E.;
Zanger, Ulrich M.;
Zell, Andreas

Publication type:

Article

Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2554, doi. 10.1093/bioinformatics/btr444

By:

Xiong, Hui Yuan;
Barash, Yoseph;
Frey, Brendan J.

Publication type:

Article

RNAG: a new Gibbs sampler for predicting RNA secondary structure for unaligned sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2486, doi. 10.1093/bioinformatics/btr421

By:

Wei, Donglai;
Alpert, Lauren V.;
Lawrence, Charles E.

Publication type:

Article

SEED: efficient clustering of next-generation sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2502, doi. 10.1093/bioinformatics/btr447

By:

Bao, Ergude;
Jiang, Tao;
Kaloshian, Isgouhi;
Girke, Thomas

Publication type:

Article

CAM-CM: a signal deconvolution tool for in vivo dynamic contrast-enhanced imaging of complex tissues.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2607, doi. 10.1093/bioinformatics/btr436

By:

Chen, Li;
Chan, Tsung-Han;
Choyke, Peter L.;
Hillman, Elizabeth M. C.;
Chi, Chong−Yung;
Bhujwalla, Zaver M.;
Wang, Ge;
Wang, Sean S.;
Szabo, Zsolt;
Wang, Yue

Publication type:

Article

Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding?

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2529, doi. 10.1093/bioinformatics/btr437

By:

Liu, Qian;
Hoi, Steven C. H.;
Su, Chinh T. T.;
Li, Zhenhua;
Kwoh, Chee-Keong;
Wong, Limsoon;
Li, Jinyan

Publication type:

Article

Discovering novel subsystems using comparative genomics.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2478, doi. 10.1093/bioinformatics/btr428

By:

Ferrer, Luciana;
Shearer, Alexander G.;
Karp, Peter D.

Publication type:

Article

phyloMeta: a program for phylogenetic comparative analyses with meta-analysis.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2603, doi. 10.1093/bioinformatics/btr438

By:

Lajeunesse, Marc J.

Publication type:

Article

RseqFlow: workflows for RNA-Seq data analysis.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2598, doi. 10.1093/bioinformatics/btr441

By:

Wang, Ying;
Mehta, Gaurang;
Mayani, Rajiv;
Lu, Jingxi;
Souaiaia, Tade;
Chen, Yangho;
Clark, Andrew;
Yoon, Hee Jae;
Wan, Lin;
Evgrafov, Oleg V.;
Knowles, James A.;
Deelman, Ewa;
Chen, Ting

Publication type:

Article

miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2614, doi. 10.1093/bioinformatics/btr430

By:

Yang, Xiaozeng;
Li, Lei

Publication type:

Article

VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2595, doi. 10.1093/bioinformatics/btr440

By:

Lukashin, Igor;
Novichkov, Pavel;
Boffelli, Dario;
Paciorkowski, Alex R.;
Minovitsky, Simon;
Yang, Song;
Dubchak, Inna

Publication type:

Article