Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 17

Results: 34

Tissue-specific prediction of directly regulated genes.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2354, doi. 10.1093/bioinformatics/btr399

By:

McLeay, Robert C.;
Leat, Chris J.;
Bailey, Timothy L.

Publication type:

Article

StochKit2: software for discrete stochastic simulation of biochemical systems with events.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2457, doi. 10.1093/bioinformatics/btr401

By:

Sanft, Kevin R.;
Wu, Sheng;
Roh, Min;
Fu, Jin;
Lim, Rone Kwei;
Petzold, Linda R.

Publication type:

Article

Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2368, doi. 10.1093/bioinformatics/btr396

By:

Goncearenco, Alexander;
Berezovsky, Igor N.

Publication type:

Article

A Lasso regression model for the construction of microRNA-target regulatory networks.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2406, doi. 10.1093/bioinformatics/btr410

By:

Lu, Yiming;
Zhou, Yang;
Qu, Wubin;
Deng, Minghua;
Zhang, Chenggang

Publication type:

Article

RxnFinder: biochemical reaction search engines using molecular structures, molecular fragments and reaction similarity.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2465

By:

Hu, Qian-Nan;
Deng, Zhe;
Hu, Huanan;
Cao, Dong−Sheng;
Liang, Yi−Zeng

Publication type:

Article

Making whole genome multiple alignments usable for biologists.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2426, doi. 10.1093/bioinformatics/btr398

By:

Blankenberg, Daniel;
Taylor, James;
Nekrutenko, Anton

Publication type:

Article

IRiS: Construction of ARG networks at genomic scales.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2448, doi. 10.1093/bioinformatics/btr423

By:

Javed, Asif;
Pybus, Marc;
Melé, Marta;
Utro, Filippo;
Bertranpetit, Jaume;
Calafell, Francesc;
Parida, Laxmi

Publication type:

Article

Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2453, doi. 10.1093/bioinformatics/btr390

By:

Longair, Mark H.;
Baker, Dean A.;
Armstrong, J. Douglas

Publication type:

Article

ontoCAT: an R package for ontology traversal and search.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2468, doi. 10.1093/bioinformatics/btr375

By:

Kurbatova, Natalja;
Adamusiak, Tomasz;
Kurnosov, Pavel;
Swertz, Morris A.;
Kapushesky, Misha

Publication type:

Article

SpEED: fast computation of sensitive spaced seeds.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2433, doi. 10.1093/bioinformatics/btr368

By:

Ilie, Lucian;
Ilie, Silvana;
Mansouri Bigvand, Anahita

Publication type:

Article

CytoscapeRPC: a plugin to create, modify and query Cytoscape networks from scripting languages.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2451, doi. 10.1093/bioinformatics/btr388

By:

Bot, Jan J.;
Reinders, Marcel J. T.

Publication type:

Article

CSO validator: improving manual curation workflow for biological pathways.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2471, doi. 10.1093/bioinformatics/btr395

By:

Jeong, Euna;
Nagasaki, Masao;
Ikeda, Emi;
Sekiya, Yayoi;
Saito, Ayumu;
Miyano, Satoru

Publication type:

Article

APCluster: an R package for affinity propagation clustering.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2463, doi. 10.1093/bioinformatics/btr406

By:

Bodenhofer, Ulrich;
Kothmeier, Andreas;
Hochreiter, Sepp

Publication type:

Article

Annotation concept synthesis and enrichment analysis: a logic-based approach to the interpretation of high-throughput experiments.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2391, doi. 10.1093/bioinformatics/btr337

By:

Jiline, Mikhail;
Matwin, Stan;
Turcotte, Marcel

Publication type:

Article

MethylCoder: software pipeline for bisulfite-treated sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2435, doi. 10.1093/bioinformatics/btr394

By:

Pedersen, Brent;
Hsieh, Tzung-Fu;
Ibarra, Christian;
Fischer, Robert L.

Publication type:

Article

A Grid-enabled web portal for NMR structure refinement with AMBER.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2384, doi. 10.1093/bioinformatics/btr415

By:

Bertini, Ivano;
Case, David A.;
Ferella, Lucio;
Giachetti, Andrea;
Rosato, Antonio

Publication type:

Article

Simple high-throughput annotation pipeline (SHAP).

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2431, doi. 10.1093/bioinformatics/btr411

By:

DeMaere, Matthew Z.;
Lauro, Federico M.;
Thomas, Torsten;
Yau, Sheree;
Cavicchioli, Ricardo

Publication type:

Article

A rank-based statistical test for measuring synergistic effects between two gene sets.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2399, doi. 10.1093/bioinformatics/btr382

By:

Shiraishi, Yuichi;
Okada-Hatakeyama, Mariko;
Miyano, Satoru

Publication type:

Article

A novel signal processing approach for the detection of copy number variations in the human genome.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2338, doi. 10.1093/bioinformatics/btr402

By:

Stamoulis, Catherine;
Betensky, Rebecca A.

Publication type:

Article

PGAT: a multistrain analysis resource for microbial genomes.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2429, doi. 10.1093/bioinformatics/btr418

By:

Brittnacher, M. J.;
Fong, C.;
Hayden, H. S.;
Jacobs, M. A.;
Radey, Matthew;
Rohmer, L.

Publication type:

Article

NASP: a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2443, doi. 10.1093/bioinformatics/btr417

By:

Semegni, J. Y.;
Wamalwa, M.;
Gaujoux, R.;
Harkins, G. W.;
Gray, A.;
Martin, D. P.

Publication type:

Article

DECOD: fast and accurate discriminative DNA motif finding.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2361, doi. 10.1093/bioinformatics/btr412

By:

Huggins, Peter;
Zhong, Shan;
Shiff, Idit;
Beckerman, Rachel;
Laptenko, Oleg;
Prives, Carol;
Schulz, Marcel H.;
Simon, Itamar;
Bar-Joseph, Ziv

Publication type:

Article

MetATT: a web-based metabolomics tool for analyzing time-series and two-factor datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2455, doi. 10.1093/bioinformatics/btr392

By:

Xia, Jianguo;
Sinelnikov, Igor V.;
Wishart, David S.

Publication type:

Article

TotalReCaller: improved accuracy and performance via integrated alignment and base-calling.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2330, doi. 10.1093/bioinformatics/btr393

By:

Menges, Fabian;
Narzisi, Giuseppe;
Mishra, Bud

Publication type:

Article

ModeRNA server: an online tool for modeling RNA 3D structures.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2441, doi. 10.1093/bioinformatics/btr400

By:

Rother, Magdalena;
Milanowska, Kaja;
Puton, Tomasz;
Jeleniewicz, Jaroslaw;
Rother, Kristian;
Bujnicki, Janusz M.

Publication type:

Article

Sufficient statistics and expectation maximization algorithms in phylogenetic tree models.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2346, doi. 10.1093/bioinformatics/btr420

By:

Kiryu, Hisanori

Publication type:

Article

spacodiR: structuring of phylogenetic diversity in ecological communities.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2437, doi. 10.1093/bioinformatics/btr403

By:

Eastman, Jonathan M.;
Paine, C. E. Timothy;
Hardy, Olivier J.

Publication type:

Article

Identification of novel transcripts in annotated genomes using RNA-Seq.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2325, doi. 10.1093/bioinformatics/btr355

By:

Roberts, Adam;
Pimentel, Harold;
Trapnell, Cole;
Pachter, Lior

Publication type:

Article

PREDA: an R-package to identify regional variations in genomic data.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2446, doi. 10.1093/bioinformatics/btr404

By:

Ferrari, Francesco;
Solari, Aldo;
Battaglia, Cristina;
Bicciato, Silvio

Publication type:

Article

Simulating systems genetics data with SysGenSIM.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2459, doi. 10.1093/bioinformatics/btr407

By:

Pinna, Andrea;
Soranzo, Nicola;
Hoeschele, Ina;
de la Fuente, Alberto

Publication type:

Article

DivBayes and SubT: exploring species diversification using Bayesian statistics.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2439, doi. 10.1093/bioinformatics/btr405

By:

Ryberg, Martin;
Nilsson, R. Henrik;
Matheny, P. Brandon

Publication type:

Article

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2414, doi. 10.1093/bioinformatics/btr414

By:

Lopes, Tiago J. S.;
Schaefer, Martin;
Shoemaker, Jason;
Matsuoka, Yukiko;
Fontaine, Jean−Fred;
Neumann, Gabriele;
Andrade-Navarro, Miguel A.;
Kawaoka, Yoshihiro;
Kitano, Hiroaki

Publication type:

Article

BRISK—research-oriented storage kit for biology-related data.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2422, doi. 10.1093/bioinformatics/btr389

By:

Tan, Alan;
Tripp, Ben;
Daley, Denise

Publication type:

Article

Elemental composition determination based on MSn.

Published in:

Bioinformatics, 2011, v. 27, n. 17, p. 2376, doi. 10.1093/bioinformatics/btr409

By:

Rojas-Chertó, Miguel;
Kasper, Piotr T.;
Willighagen, Egon L.;
Vreeken, Rob J.;
Hankemeier, Thomas;
Reijmers, Theo H.

Publication type:

Article