Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 15

Results: 30

Response to “Comments on ‘Bayesian variable selection for disease classification using gene expression data’”.

Published in:

2011

By:

Song, Xin-Yuan;
Lu, Zhao-Hua

Publication type:

Letter

The variant call format and VCFtools.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2156

By:

Danecek, Petr;
Auton, Adam;
Abecasis, Goncalo;
Albers, Cornelis A.;
Banks, Eric;
DePristo, Mark A.;
Handsaker, Robert E.;
Lunter, Gerton;
Marth, Gabor T.;
Sherry, Stephen T.;
McVean, Gilean;
Durbin, Richard

Publication type:

Article

Characteristics of 454 pyrosequencing data—enabling realistic simulation with flowsim.

Published in:

2011

By:

Balzer, Susanne;
Malde, Ketil;
Lanzén, Anders;
Sharma, Animesh;
Jonassen, Inge

Publication type:

Correction Notice

A procedure to statistically evaluate agreement of differential expression for cross-species genomics.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2098, doi. 10.1093/bioinformatics/btr362

By:

Pounds, Stan;
Gao, Cuilan Lani;
Johnson, Robert A.;
Wright, Karen D.;
Poppleton, Helen;
Finkelstein, David;
Leary, Sarah E. S.;
Gilbertson, Richard J.

Publication type:

Article

A tree-based approach for motif discovery and sequence classification.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2054, doi. 10.1093/bioinformatics/btr353

By:

Yan, Rui;
Boutros, Paul C.;
Jurisica, Igor

Publication type:

Article

JSBML: a flexible Java library for working with SBML.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2167, doi. 10.1093/bioinformatics/btr361

By:

Dräger, Andreas;
Rodriguez, Nicolas;
Dumousseau, Marine;
Dörr, Alexander;
Wrzodek, Clemens;
Le Novère, Nicolas;
Zell, Andreas;
Hucka, Michael

Publication type:

Article

Prediction of transporter targets using efficient RBF networks with PSSM profiles and biochemical properties.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2062, doi. 10.1093/bioinformatics/btr340

By:

Chen, Shu-An;
Ou, Yu-Yen;
Lee, Tzong-Yi;
Gromiha, M. Michael

Publication type:

Article

A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2047, doi. 10.1093/bioinformatics/btr344

By:

Bansal, Vikas;
Libiger, Ondrej

Publication type:

Article

Robust biclustering by sparse singular value decomposition incorporating stability selection.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2089, doi. 10.1093/bioinformatics/btr322

By:

Sill, Martin;
Kaiser, Sebastian;
Benner, Axel;
Kopp-Schneider, Annette

Publication type:

Article

Mathematical modeling of 16S ribosomal DNA amplification reveals optimal conditions for the interrogation of complex microbial communities with phylogenetic microarrays.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2134, doi. 10.1093/bioinformatics/btr326

By:

Paliy, Oleg;
Foy, Brent D.

Publication type:

Article

Xwalk: computing and visualizing distances in cross-linking experiments.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2163, doi. 10.1093/bioinformatics/btr348

By:

Kahraman, Abdullah;
Malmström, Lars;
Aebersold, Ruedi

Publication type:

Article

Enriching targeted sequencing experiments for rare disease alleles.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2112, doi. 10.1093/bioinformatics/btr324

By:

Edwards, Todd L.;
Song, Zhuo;
Li, Chun

Publication type:

Article

SEAL: a distributed short read mapping and duplicate removal tool.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2159, doi. 10.1093/bioinformatics/btr325

By:

Pireddu, Luca;
Leo, Simone;
Zanetti, Gianluigi

Publication type:

Article

Varying coefficient model for gene–environment interaction: a non-linear look.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2119, doi. 10.1093/bioinformatics/btr318

By:

Ma, Shujie;
Yang, Lijian;
Romero, Roberto;
Cui, Yuehua

Publication type:

Article

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2076, doi. 10.1093/bioinformatics/btr350

By:

Yang, Yuedong;
Faraggi, Eshel;
Zhao, Huiying;
Zhou, Yaoqi

Publication type:

Article

PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2165, doi. 10.1093/bioinformatics/btr336

By:

Luna, Augustin;
Sunshine, Margot L.;
van Iersel, Martijn P.;
Aladjem, Mirit I.;
Kohn, Kurt W.

Publication type:

Article

The Biological Connection Markup Language: a SBGN-compliant format for visualization, filtering and analysis of biological pathways.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2127, doi. 10.1093/bioinformatics/btr339

By:

Beltrame, Luca;
Calura, Enrica;
Popovici, Razvan R.;
Rizzetto, Lisa;
Guedez, Damariz Rivero;
Donato, Michele;
Romualdi, Chiara;
Draghici, Sorin;
Cavalieri, Duccio

Publication type:

Article

False positive peaks in ChIP-seq and other sequencing-based functional assays caused by unannotated high copy number regions.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2144, doi. 10.1093/bioinformatics/btr354

By:

Pickrell, Joseph K.;
Gaffney, Daniel J.;
Gilad, Yoav;
Pritchard, Jonathan K.

Publication type:

Article

nucleR: a package for non-parametric nucleosome positioning.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2149, doi. 10.1093/bioinformatics/btr345

By:

Flores, Oscar;
Orozco, Modesto

Publication type:

Article

RNASAlign: RNA Structural Alignment System.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2151, doi. 10.1093/bioinformatics/btr338

By:

Wong, Thomas K. F.;
Wan, Kwok-Lung;
Hsu, Bay-Yuan;
Cheung, Brenda W. Y.;
Hon, Wing-Kai;
Lam, Tak-Wah;
Yiu, Siu-Ming

Publication type:

Article

Parent-specific copy number in paired tumor–normal studies using circular binary segmentation.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2038, doi. 10.1093/bioinformatics/btr329

By:

Olshen, Adam B.;
Bengtsson, Henrik;
Neuvial, Pierre;
Spellman, Paul T.;
Olshen, Richard A.;
Seshan, Venkatraman E.

Publication type:

Article

CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2147, doi. 10.1093/bioinformatics/btr357

By:

Wong, Wing Chung;
Kim, Dewey;
Carter, Hannah;
Diekhans, Mark;
Ryan, Michael C.;
Karchin, Rachel

Publication type:

Article

Pathogen detection using short-RNA deep sequencing subtraction and assembly.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2027, doi. 10.1093/bioinformatics/btr349

By:

Isakov, Ofer;
Modai, Shira;
Shomron, Noam

Publication type:

Article

MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effects.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2104, doi. 10.1093/bioinformatics/btr323

By:

Westra, Harm-Jan;
Jansen, Ritsert C.;
Fehrmann, Rudolf S. N.;
te Meerman, Gerard J.;
van Heel, David;
Wijmenga, Cisca;
Franke, Lude

Publication type:

Article

genBlastG: using BLAST searches to build homologous gene models.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2141, doi. 10.1093/bioinformatics/btr342

By:

She, Rong;
Chu, Jeffrey Shih-Chieh;
Uyar, Bora;
Wang, Jun;
Wang, Ke;
Chen, Nansheng

Publication type:

Article

Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2083, doi. 10.1093/bioinformatics/btr331

By:

Zhang, Zengming;
Li, Yu;
Lin, Biaoyang;
Schroeder, Michael;
Huang, Bingding

Publication type:

Article

The LabelHash Server and Tools for substructure-based functional annotation.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2161, doi. 10.1093/bioinformatics/btr343

By:

Moll, Mark;
Bryant, Drew H.;
Kavraki, Lydia E.

Publication type:

Article

Comparative studies of de novo assembly tools for next-generation sequencing technologies.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2031, doi. 10.1093/bioinformatics/btr319

By:

Lin, Yong;
Li, Jian;
Shen, Hui;
Zhang, Lei;
Papasian, Christopher J.;
Deng, Hong−Wen

Publication type:

Article

mapDamage: testing for damage patterns in ancient DNA sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2153, doi. 10.1093/bioinformatics/btr347

By:

Ginolhac, Aurelien;
Rasmussen, Morten;
Gilbert, M. Thomas P.;
Willerslev, Eske;
Orlando, Ludovic

Publication type:

Article

Aligning short reads to reference alignments and trees.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2068, doi. 10.1093/bioinformatics/btr320

By:

Berger, Simon A.;
Stamatakis, Alexandros

Publication type:

Article