Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 13

Results: 76

MPEA—metabolite pathway enrichment analysis.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1878, doi. 10.1093/bioinformatics/btr278

By:

Kankainen, Matti;
Gopalacharyulu, Peddinti;
Holm, Liisa;
Orešič, Matej

Publication type:

Article

Integrative gene network construction for predicting a set of complementary prostate cancer genes.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1846, doi. 10.1093/bioinformatics/btr283

By:

Ahn, Jaegyoon;
Yoon, Youngmi;
Park, Chihyun;
Shin, Eunji;
Park, Sanghyun

Publication type:

Article

Small sets of interacting proteins suggest functional linkage mechanisms via Bayesian analogical reasoning.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i374, doi. 10.1093/bioinformatics/btr236

By:

Airoldi, Edoardo M.;
Heller, Katherine A.;
Silva, Ricardo

Publication type:

Article

famCNV: copy number variant association for quantitative traits in families.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1873, doi. 10.1093/bioinformatics/btr264

By:

Eleftherohorinou, Hariklia;
Andersson-Assarsson, Johanna C.;
Walters, Robin G.;
El-Sayed Moustafa, Julia S.;
Coin, Lachlan;
Jacobson, Peter;
Carlsson, Lena M. S.;
Blakemore, Alexandra I. F.;
Froguel, Philippe;
Walley, Andrew J.;
Falchi, Mario

Publication type:

Article

The role of indirect connections in gene networks in predicting function.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1860, doi. 10.1093/bioinformatics/btr288

By:

Gillis, Jesse;
Pavlidis, Paul

Publication type:

Article

Piecewise linear approximation of protein structures using the principle of minimum message length.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i43, doi. 10.1093/bioinformatics/btr240

By:

Konagurthu, Arun S.;
Allison, Lloyd;
Stuckey, Peter J.;
Lesk, Arthur M.

Publication type:

Article

Application of the Bayesian MMSE estimator for classification error to gene expression microarray data.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1822, doi. 10.1093/bioinformatics/btr272

By:

Dalton, Lori A.;
Dougherty, Edward R.

Publication type:

Article

MeSH: a window into full text for document summarization.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i120, doi. 10.1093/bioinformatics/btr223

By:

Bhattacharya, Sanmitra;
Ha−Thuc, Viet;
Srinivasan, Padmini

Publication type:

Article

A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i401, doi. 10.1093/bioinformatics/btr206

By:

Zhang, Shihua;
Li, Qingjiao;
Liu, Juan;
Zhou, Xianghong Jasmine

Publication type:

Article

Discovering and visualizing indirect associations between biomedical concepts.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i111, doi. 10.1093/bioinformatics/btr214

By:

Tsuruoka, Yoshimasa;
Miwa, Makoto;
Hamamoto, Kaisei;
Tsujii, Jun'ichi;
Ananiadou, Sophia

Publication type:

Article

A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i295, doi. 10.1093/bioinformatics/btr244

By:

Mayhew, Michael B.;
Robinson, Joshua W.;
Jung, Boyoun;
Haase, Steven B.;
Hartemink, Alexander J.

Publication type:

Article

A folding algorithm for extended RNA secondary structures.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i129, doi. 10.1093/bioinformatics/btr220

By:

zu Siederdissen, Christian Höner;
Bernhart, Stephan H.;
Stadler, Peter F.;
Hofacker, Ivo L.

Publication type:

Article

Model-based gene set analysis for Bioconductor.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1882, doi. 10.1093/bioinformatics/btr296

By:

Bauer, Sebastian;
Robinson, Peter N.;
Gagneur, Julien

Publication type:

Article

The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in Saccharomyces cerevisiae.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i283, doi. 10.1093/bioinformatics/btr211

By:

Bonzanni, Nicola;
Zhang, Nianshu;
Oliver, Stephen G.;
Fisher, Jasmin

Publication type:

Article

TREEGL: reverse engineering tree-evolving gene networks underlying developing biological lineages.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i196, doi. 10.1093/bioinformatics/btr239

By:

Parikh, Ankur P.;
Wu, Wei;
Curtis, Ross E.;
Xing, Eric P.

Publication type:

Article

Prediction of peptides binding to the PKA RIIα subunit using a hierarchical strategy.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1814, doi. 10.1093/bioinformatics/btr294

By:

Hou, Tingjun;
Li, Youyong;
Wang, Wei

Publication type:

Article

HiTRACE: high-throughput robust analysis for capillary electrophoresis.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1798, doi. 10.1093/bioinformatics/btr277

By:

Yoon, Sungroh;
Kim, Jinkyu;
Hum, Justine;
Kim, Hanjoo;
Park, Seunghyun;
Kladwang, Wipapat;
Das, Rhiju

Publication type:

Article

Template-free detection of macromolecular complexes in cryo electron tomograms.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i69, doi. 10.1093/bioinformatics/btr207

By:

Xu, Min;
Beck, Martin;
Alber, Frank

Publication type:

Article

Systematic exploration of error sources in pyrosequencing flowgram data.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i304, doi. 10.1093/bioinformatics/btr251

By:

Balzer, Susanne;
Malde, Ketil;
Jonassen, Inge

Publication type:

Article

Genome-wide DNA sequence polymorphisms facilitate nucleosome positioning in yeast.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1758, doi. 10.1093/bioinformatics/btr290

By:

Dai, Zhiming;
Dai, Xianhua;
Xiang, Qian

Publication type:

Article

TVNViewer: An interactive visualization tool for exploring networks that change over time or space.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1880, doi. 10.1093/bioinformatics/btr273

By:

Curtis, Ross E.;
Yuen, Amos;
Song, Le;
Goyal, Anuj;
Xing, Eric P.

Publication type:

Article

Predicting site-specific human selective pressure using evolutionary signatures.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i266, doi. 10.1093/bioinformatics/btr241

By:

Sadri, Javad;
Diallo, Abdoulaye Banire;
Blanchette, Mathieu

Publication type:

Article

Mapping ancestral genomes with massive gene loss: A matrix sandwich problem.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i257, doi. 10.1093/bioinformatics/btr224

By:

Gavranović, Haris;
Chauve, Cedric;
Salse, Jérôme;
Tannier, Eric

Publication type:

Article

An enhanced Petri-net model to predict synergistic effects of pairwise drug combinations from gene microarray data.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i310, doi. 10.1093/bioinformatics/btr202

By:

Jin, Guangxu;
Zhao, Hong;
Zhou, Xiaobo;
Wong, Stephen T. C.

Publication type:

Article

Uncover disease genes by maximizing information flow in the phenome–interactome network.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i167, doi. 10.1093/bioinformatics/btr213

By:

Chen, Yong;
Jiang, Tao;
Jiang, Rui

Publication type:

Article

Detecting epistatic effects in association studies at a genomic level based on an ensemble approach.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i222

By:

Li, Jing;
Horstman, Benjamin;
Chen, Yixuan

Publication type:

Article

QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i52, doi. 10.1093/bioinformatics/btr248

By:

Savol, Andrej J.;
Burger, Virginia M.;
Agarwal, Pratul K.;
Ramanathan, Arvind;
Chennubhotla, Chakra S.

Publication type:

Article

RINQ: Reference-based Indexing for Network Queries.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i149

By:

Gülsoy, Günhan;
Kahveci, Tamer

Publication type:

Article

Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i214, doi. 10.1093/bioinformatics/btr218

By:

Kam-Thong, Tony;
Pütz, Benno;
Karbalai, Nazanin;
Müller−Myhsok, Bertram;
Borgwardt, Karsten

Publication type:

Article

Environment specific substitution tables improve membrane protein alignment.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i15, doi. 10.1093/bioinformatics/btr230

By:

Hill, Jamie R.;
Kelm, Sebastian;
Shi, Jiye;
Deane, Charlotte M.

Publication type:

Article

Bioinformatics challenges for personalized medicine.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1741, doi. 10.1093/bioinformatics/btr295

By:

Fernald, Guy Haskin;
Capriotti, Emidio;
Daneshjou, Roxana;
Karczewski, Konrad J.;
Altman, Russ B.

Publication type:

Article

An integrative clustering and modeling algorithm for dynamical gene expression data.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i392, doi. 10.1093/bioinformatics/btr250

By:

Sivriver, Julia;
Habib, Naomi;
Friedman, Nir

Publication type:

Article

A detailed investigation of accessibilities around target sites of siRNAs and miRNAs.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1788, doi. 10.1093/bioinformatics/btr276

By:

Kiryu, Hisanori;
Terai, Goro;
Imamura, Osamu;
Yoneyama, Hiroyuki;
Suzuki, Kenji;
Asai, Kiyoshi

Publication type:

Article

Optimally discriminative subnetwork markers predict response to chemotherapy.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i205, doi. 10.1093/bioinformatics/btr245

By:

Dao, Phuong;
Wang, Kendric;
Collins, Colin;
Ester, Martin;
Lapuk, Anna;
Sahinalp, S. Cenk

Publication type:

Article

vipR: variant identification in pooled DNA using R.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i77, doi. 10.1093/bioinformatics/btr205

By:

Altmann, Andre;
Weber, Peter;
Quast, Carina;
Rex-Haffner, Monika;
Binder, Elisabeth B.;
Müller-Myhsok, Bertram

Publication type:

Article

Construction of co-complex score matrix for protein complex prediction from AP-MS data.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i159, doi. 10.1093/bioinformatics/btr212

By:

Xie, Zhipeng;
Kwoh, Chee Keong;
Li, Xiao-Li;
Wu, Min

Publication type:

Article

Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1780, doi. 10.1093/bioinformatics/btr291

By:

Lee, Tzong-Yi;
Lin, Zong-Qing;
Hsieh, Sheng-Jen;
Bretaña, Neil Arvin;
Lu, Cheng-Tsung

Publication type:

Article

A method for probing the mutational landscape of amyloid structure.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i34, doi. 10.1093/bioinformatics/btr238

By:

O'Donnell, Charles W.;
Waldispühl, Jérôme;
Lis, Mieszko;
Halfmann, Randal;
Devadas, Srinivas;
Lindquist, Susan;
Berger, Bonnie

Publication type:

Article

Creating views on integrated multidomain data.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1839, doi. 10.1093/bioinformatics/btr282

By:

Rohn, Hendrik;
Klukas, Christian;
Schreiber, Falk

Publication type:

Article

Evaluation of drug–human serum albumin binding interactions with support vector machine aided online automated docking.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1806, doi. 10.1093/bioinformatics/btr284

By:

Zsila, Ferenc;
Bikadi, Zsolt;
Malik, David;
Hari, Peter;
Pechan, Imre;
Berces, Attila;
Hazai, Eszter

Publication type:

Article

Meta-IDBA: a de Novo assembler for metagenomic data.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i94, doi. 10.1093/bioinformatics/btr216

By:

Peng, Yu;
Leung, Henry C. M.;
Yiu, S. M.;
Chin, Francis Y. L.

Publication type:

Article

Error correction of high-throughput sequencing datasets with non-uniform coverage.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i137, doi. 10.1093/bioinformatics/btr208

By:

Medvedev, Paul;
Scott, Eric;
Kakaradov, Boyko;
Pevzner, Pavel

Publication type:

Article

StructHDP: automatic inference of number of clusters and population structure from admixed genotype data.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i324, doi. 10.1093/bioinformatics/btr242

By:

Shringarpure, Suyash;
Won, Daegun;
Xing, Eric P.

Publication type:

Article

Generative probabilistic models for protein–protein interaction networks—the biclique perspective.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i142, doi. 10.1093/bioinformatics/btr201

By:

Schweiger, Regev;
Linial, Michal;
Linial, Nathan

Publication type:

Article

BINOCh: binding inference from nucleosome occupancy changes.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1867, doi. 10.1093/bioinformatics/btr279

By:

Meyer, Clifford A.;
He, Housheng H.;
Brown, Myles;
Liu, X. Shirley

Publication type:

Article

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i366, doi. 10.1093/bioinformatics/btr228

By:

Geistlinger, Ludwig;
Csaba, Gergely;
Küffner, Robert;
Mulder, Nicola;
Zimmer, Ralf

Publication type:

Article

Sorting the nuclear proteome.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i7, doi. 10.1093/bioinformatics/btr217

By:

Bauer, Denis C.;
Willadsen, Kai;
Buske, Fabian A.;
Lê Cao, Kim-Anh;
Bailey, Timothy L.;
Dellaire, Graham;
Bodén, Mikael

Publication type:

Article

Identification of metabolic network models from incomplete high-throughput datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i186, doi. 10.1093/bioinformatics/btr225

By:

Berthoumieux, Sara;
Brilli, Matteo;
de Jong, Hidde;
Kahn, Daniel;
Cinquemani, Eugenio

Publication type:

Article

Modular model of TNFα cytotoxicity.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1754, doi. 10.1093/bioinformatics/btr297

By:

Chignola, Roberto;
Vyshemirsky, Vladislav;
Farina, Marcello;
Del Fabbro, Alessio;
Milotti, Edoardo

Publication type:

Article

Author Index.

Published in:: Bioinformatics, 2011, v. 27, n. 13, p. i410, doi. 10.1093/bioinformatics/btr352
Publication type:: Article