Works matching IS 13674803 AND DT 2011 AND VI 27 AND IP 12

Results: 36

SMETHILLIUM: spatial normalization METHod for ILLumina InfinIUM HumanMethylation BeadChip.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1693, doi. 10.1093/bioinformatics/btr187

By:

Sabbah, Camille;
Mazo, Gildas;
Paccard, Caroline;
Reyal, Fabien;
Hupé, Philippe

Publication type:

Article

ReMark: an automatic program for clustering orthologs flexibly combining a Recursive and a Markov clustering algorithms.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1731, doi. 10.1093/bioinformatics/btr259

By:

Kim, Kangseok;
Kim, Wonil;
Kim, Sunshin

Publication type:

Article

FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1704, doi. 10.1093/bioinformatics/btr252

By:

Niu, Beifang;
Zhu, Zhengwei;
Fu, Limin;
Wu, Sitao;
Li, Weizhong

Publication type:

Article

Figure summarizer browser extensions for PubMed Central.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1723, doi. 10.1093/bioinformatics/btr194

By:

Agarwal, Shashank;
Yu, Hong

Publication type:

Article

A graphical interface for the FoldX forcefield.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1711, doi. 10.1093/bioinformatics/btr254

By:

Van Durme, Joost;
Delgado, Javier;
Stricher, Francois;
Serrano, Luis;
Schymkowitz, Joost;
Rousseau, Frederic

Publication type:

Article

A reference dataset for the analyses of membrane protein secondary structures and transmembrane residues using circular dichroism spectroscopy.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1630, doi. 10.1093/bioinformatics/btr234

By:

Abdul-Gader, Ali;
Miles, Andrew John;
Wallace, B. A.

Publication type:

Article

FusionHunter: identifying fusion transcripts in cancer using paired-end RNA-seq.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1708, doi. 10.1093/bioinformatics/btr265

By:

Li, Yang;
Chien, Jeremy;
Smith, David I.;
Ma, Jian

Publication type:

Article

‘Sciencenet’—towards a global search and share engine for all scientific knowledge.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1734, doi. 10.1093/bioinformatics/btr181

By:

Lütjohann, Dominic S.;
Shah, Asmi H.;
Christen, Michael P.;
Richter, Florian;
Knese, Karsten;
Liebel, Urban

Publication type:

Article

APOLLO: a quality assessment service for single and multiple protein models.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1715, doi. 10.1093/bioinformatics/btr268

By:

Wang, Zheng;
Eickholt, Jesse;
Cheng, Jianlin

Publication type:

Article

PLIO: an ontology for formal description of protein–ligand interactions.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1684, doi. 10.1093/bioinformatics/btr256

By:

Ivchenko, Olga;
Younesi, Erfan;
Shahid, Mohammad;
Wolf, Antje;
Müller, Bernd;
Hofmann-Apitius, Martin

Publication type:

Article

Mcheza: a workbench to detect selection using dominant markers.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1717, doi. 10.1093/bioinformatics/btr253

By:

Antao, Tiago;
Beaumont, Mark A.

Publication type:

Article

DREME: motif discovery in transcription factor ChIP-seq data.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1653, doi. 10.1093/bioinformatics/btr261

By:

Bailey, Timothy L.

Publication type:

Article

PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1727, doi. 10.1093/bioinformatics/btr200

By:

Lee, Woonghee;
Kim, Jin Hae;
Westler, William M.;
Markley, John L.

Publication type:

Article

Mixture models for analysis of the taxonomic composition of metagenomes.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1618, doi. 10.1093/bioinformatics/btr266

By:

Meinicke, Peter;
Aßhauer, Kathrin Petra;
Lingner, Thomas

Publication type:

Article

Genome annotation test with validation on transcription start site and ChIP-Seq for Pol-II binding data.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1610, doi. 10.1093/bioinformatics/btr263

By:

Bedo, Justin;
Kowalczyk, Adam

Publication type:

Article

MEME-ChIP: motif analysis of large DNA datasets.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1696, doi. 10.1093/bioinformatics/btr189

By:

Machanick, Philip;
Bailey, Timothy L.

Publication type:

Article

Rgtsp: a generalized top scoring pairs package for class prediction.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1729, doi. 10.1093/bioinformatics/btr233

By:

Popovici, Vlad;
Budinská, Eva;
Delorenzi, Mauro

Publication type:

Article

Services for prediction of drug susceptibility for HIV proteases and reverse transcriptases at the HIV drug research centre.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1719, doi. 10.1093/bioinformatics/btr192

By:

Spjuth, Ola;
Eklund, Martin;
Lapins, Maris;
Junaid, Muhammad;
Wikberg, Jarl E. S.

Publication type:

Article

BamTools: a C++ API and toolkit for analyzing and managing BAM files.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1691, doi. 10.1093/bioinformatics/btr174

By:

Barnett, Derek W.;
Garrison, Erik K.;
Quinlan, Aaron R.;
Strömberg, Michael P.;
Marth, Gabor T.

Publication type:

Article

KalignP: Improved multiple sequence alignments using position specific gap penalties in Kalign2.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1702, doi. 10.1093/bioinformatics/btr235

By:

Shu, Nanjiang;
Elofsson, Arne

Publication type:

Article

An optimal peak alignment for comprehensive two-dimensional gas chromatography mass spectrometry using mixture similarity measure.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1660, doi. 10.1093/bioinformatics/btr188

By:

Kim, Seongho;
Fang, Aiqin;
Wang, Bing;
Jeong, Jaesik;
Zhang, Xiang

Publication type:

Article

Improved similarity scores for comparing motifs.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1603, doi. 10.1093/bioinformatics/btr257

By:

Tanaka, Emi;
Bailey, Timothy;
Grant, Charles E.;
Noble, William Stafford;
Keich, Uri

Publication type:

Article

Signaling gateway molecule pages—a data model perspective.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1736, doi. 10.1093/bioinformatics/btr190

By:

Dinasarapu, Ashok Reddy;
Saunders, Brian;
Ozerlat, Iley;
Azam, Kenan;
Subramaniam, Shankar

Publication type:

Article

Multiple-rule bias in the comparison of classification rules.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1675, doi. 10.1093/bioinformatics/btr262

By:

Yousefi, Mohammadmahdi R.;
Hua, Jianping;
Dougherty, Edward R.

Publication type:

Article

Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1698, doi. 10.1093/bioinformatics/btr267

By:

Ostrovnaya, Irina;
Seshan, Venkatraman E.;
Olshen, Adam B.;
Begg, Colin B.

Publication type:

Article

Grid computing for improving conformational sampling in NMR structure calculation.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1713, doi. 10.1093/bioinformatics/btr255

By:

Mareuil, Fabien;
Blanchet, Christophe;
Malliavin, Thérèse E.;
Nilges, Michael

Publication type:

Article

Boulder ALignment Editor (ALE): a web-based RNA alignment tool.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1706, doi. 10.1093/bioinformatics/btr258

By:

Stombaugh, Jesse;
Widmann, Jeremy;
McDonald, Daniel;
Knight, Rob

Publication type:

Article

MAISTAS: a tool for automatic structural evaluation of alternative splicing products.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1625, doi. 10.1093/bioinformatics/btr198

By:

Floris, Matteo;
Raimondo, Domenico;
Leoni, Guido;
Orsini, Massimiliano;
Marcatili, Paolo;
Tramontano, Anna

Publication type:

Article

Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1645, doi. 10.1093/bioinformatics/btr199

By:

Seifert, Michael;
Strickert, Marc;
Schliep, Alexander;
Grosse, Ivo

Publication type:

Article

Cobweb: a Java applet for network exploration and visualisation.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1725, doi. 10.1093/bioinformatics/btr195

By:

von Eichborn, Joachim;
Bourne, Philip E.;
Preissner, Robert

Publication type:

Article

Identification and quantification of metabolites in 1H NMR spectra by Bayesian model selection.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1637, doi. 10.1093/bioinformatics/btr118

By:

Zheng, Cheng;
Zhang, Shucha;
Ragg, Susanne;
Raftery, Daniel;
Vitek, Olga

Publication type:

Article

Pathway analysis of high-throughput biological data within a Bayesian network framework.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1667, doi. 10.1093/bioinformatics/btr269

By:

Isci, Senol;
Ozturk, Cengizhan;
Jones, Jon;
Otu, Hasan H.

Publication type:

Article

RuleBender: a visual interface for rule-based modeling.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1721, doi. 10.1093/bioinformatics/btr197

By:

Xu, Wen;
Smith, Adam M.;
Faeder, James R.;
Marai, G. Elisabeta

Publication type:

Article

OTUbase: an R infrastructure package for operational taxonomic unit data.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1700, doi. 10.1093/bioinformatics/btr196

By:

Beck, Daniel;
Settles, Matt;
Foster, James A.

Publication type:

Article

Molecular signatures database (MSigDB) 3.0.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1739, doi. 10.1093/bioinformatics/btr260

By:

Liberzon, Arthur;
Subramanian, Aravind;
Pinchback, Reid;
Thorvaldsdóttir, Helga;
Tamayo, Pablo;
Mesirov, Jill P.

Publication type:

Article

PathScan: a tool for discerning mutational significance in groups of putative cancer genes.

Published in:

Bioinformatics, 2011, v. 27, n. 12, p. 1595, doi. 10.1093/bioinformatics/btr193

By:

Wendl, Michael C.;
Wallis, John W.;
Lin, Ling;
Kandoth, Cyriac;
Mardis, Elaine R.;
Wilson, Richard K.;
Ding, Li

Publication type:

Article