Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 9

Results: 27

varLD: a program for quantifying variation in linkage disequilibrium patterns between populations.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1269, doi. 10.1093/bioinformatics/btq125

By:

Ong, Rick Twee-Hee;
Teo, Yik-Ying;
Barrett, Jeffrey

Publication type:

Article

HALO—a Java framework for precise transcript half-life determination.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1264, doi. 10.1093/bioinformatics/btq117

By:

Friedel, Caroline C.;
Kaufmann, Stefanie;
Dölken, Lars;
Zimmer, Ralf;
Dopazo, Joaquin

Publication type:

Article

A machine learning approach to predicting protein–ligand binding affinity with applications to molecular docking.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1169, doi. 10.1093/bioinformatics/btq112

By:

Ballester, Pedro J.;
Mitchell, John B. O.;
Rost, Burkhard

Publication type:

Article

Going from where to why—interpretable prediction of protein subcellular localization.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1232, doi. 10.1093/bioinformatics/btq115

By:

Briesemeister, Sebastian;
Rahnenführer, Jörg;
Kohlbacher, Oliver;
Quackenbush, John

Publication type:

Article

Reducing the algorithmic variability in transcriptome-based inference.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1185, doi. 10.1093/bioinformatics/btq104

By:

Tuna, Salih;
Niranjan, Mahesan;
Dopazo, Joaquin

Publication type:

Article

Building a high-quality sense inventory for improved abbreviation disambiguation.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1246, doi. 10.1093/bioinformatics/btq129

By:

Okazaki, Naoaki;
Ananiadou, Sophia;
Tsujii, Jun'ichi;
Wren, Jonathan

Publication type:

Article

Alignment-free local structural search by writhe decomposition.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1176, doi. 10.1093/bioinformatics/btq127

By:

Zhi, Degui;
Shatsky, Maxim;
Brenner, Steven E.;
Tramontano, Anna

Publication type:

Article

Identification of genetic network dynamics with unate structure.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1239, doi. 10.1093/bioinformatics/btq120

By:

Porreca, Riccardo;
Cinquemani, Eugenio;
Lygeros, John;
Ferrari-Trecate, Giancarlo;
Ideker, Trey

Publication type:

Article

SeSAW: balancing sequence and structural information in protein functional mapping.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1258, doi. 10.1093/bioinformatics/btq116

By:

Standley, Daron M.;
Yamashita, Reiko;
Kinjo, Akira R.;
Toh, Hiroyuki;
Nakamura, Haruki;
Valencia, Alfonso

Publication type:

Article

Localized motif discovery in gene regulatory sequences.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1152, doi. 10.1093/bioinformatics/btq106

By:

Narang, Vipin;
Mittal, Ankush;
Sung, Wing-Kin;
Valencia, Alfonso

Publication type:

Article

Mutual information is critically dependent on prior assumptions: would the correct estimate of mutual information please identify itself?

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1135, doi. 10.1093/bioinformatics/btq111

By:

Fernandes, Andrew D.;
Gloor, Gregory B.;
Rost, Burkhard

Publication type:

Article

A signal–noise model for significance analysis of ChIP-seq with negative control.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1199, doi. 10.1093/bioinformatics/btq128

By:

Han Xu;
Handoko, Lusy;
Xueliang Wei;
Chaopeng Ye;
Jianpeng Sheng;
Chia-Lin Wei;
Feng Lin;
Wing-Kin Sung;
Dopazo, Joaquin

Publication type:

Article

Genome-wide inferring gene–phenotype relationship by walking on the heterogeneous network.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1219, doi. 10.1093/bioinformatics/btq108

By:

Yongjin Li;
Patra, Jagdish C.;
Valencia, Alfonso

Publication type:

Article

TiSGeD: a database for tissue-specific genes.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1273, doi. 10.1093/bioinformatics/btq109

By:

Sheng-Jian Xiao;
Chi Zhang;
Quan Zou;
Zhi-Liang Ji;
Wren, Jonathan

Publication type:

Article

WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1262, doi. 10.1093/bioinformatics/btq016

By:

Boyer, Frédéric;
Besson, Bruno;
Baptist, Guillaume;
Izard, Jérôme;
Pinel, Corinne;
Ropers, Delphine;
Geiselmann, Johannes;
de Jong, Hidde;
Ideker, Trey

Publication type:

Article

TopoGSA: network topological gene set analysis.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1271, doi. 10.1093/bioinformatics/btq131

By:

Glaab, Enrico;
Baudot, Anaïs;
Krasnogor, Natalio;
Valencia, Alfonso;
Wren, Jonathan

Publication type:

Article

Genome-wide synteny through highly sensitive sequence alignment: Satsuma.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1145, doi. 10.1093/bioinformatics/btq102

By:

Grabherr, Manfred G.;
Russell, Pamela;
Meyer, Miriah;
Mauceli, Evan;
Alföldi, Jessica;
Di Palma, Federica;
Lindblad-Toh, Kerstin;
Frishman, Dmitrij

Publication type:

Article

PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1225, doi. 10.1093/bioinformatics/btq113

By:

Schramm, Gunnar;
Wiesberg, Stefan;
Diessl, Nicolle;
Kranz, Anna-Lena;
Sagulenko, Vitalia;
Oswald, Marcus;
Reinelt, Gerhard;
Westermann, Frank;
Eils, Roland;
König, Rainer;
Valencia, Alfonso

Publication type:

Article

PanCGHweb: a web tool for genotype calling in pangenome CGH data.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1256, doi. 10.1093/bioinformatics/btq103

By:

Bayjanov, Jumamurat R.;
Siezen, Roland J.;
van Hijum, Sacha A. F. T.;
Bishop, Martin

Publication type:

Article

ArchSchema: a tool for interactive graphing of related Pfam domain architectures.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1260, doi. 10.1093/bioinformatics/btq119

By:

Tamuri, Asif U.;
Laskowski, Roman A.;
Rost, Burkhard

Publication type:

Article

Integrative mixture of experts to combine clinical factors and gene markers.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1192, doi. 10.1093/bioinformatics/btq107

By:

Lê Cao, Kim-Anh;
Meugnier, Emmanuelle;
McLachlan, Geoffrey J.;
Troyanskaya, Olga

Publication type:

Article

PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene–disease associations.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1205, doi. 10.1093/bioinformatics/btq126

By:

Denny, Joshua C.;
Ritchie, Marylyn D.;
Basford, Melissa A.;
Pulley, Jill M.;
Bastarache, Lisa;
Brown-Gentry, Kristin;
Wang, Deede;
Masys, Dan R.;
Roden, Dan M.;
Crawford, Dana C.;
Barrett, Jeffery

Publication type:

Article

LOTUS, a new domain associated with small RNA pathways in the germline.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1140, doi. 10.1093/bioinformatics/btq122

By:

Callebaut, Isabelle;
Mornon, Jean-Paul;
Bateman, Alex

Publication type:

Article

ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1160, doi. 10.1093/bioinformatics/btq100

By:

Konc, Janez;
Janežič, Dušanka;
Tramontano, Anna

Publication type:

Article

Pathway discovery in metabolic networks by subgraph extraction.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1211, doi. 10.1093/bioinformatics/btq105

By:

Faust, Karoline;
Dupont, Pierre;
Callut, Jéróme;
van Helden, Jacques;
Wren, Jonathan

Publication type:

Article

CoP: a database for characterizing co-expressed gene modules with biological information in plants.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1267, doi. 10.1093/bioinformatics/btq121

By:

Ogata, Yoshiyuki;
Suzuki, Hideyuki;
Sakurai, Nozomu;
Shibata, Daisuke

Publication type:

Article

EuGène-maize: a web site for maize gene prediction.

Published in:

Bioinformatics, 2010, v. 26, n. 9, p. 1254, doi. 10.1093/bioinformatics/btq123

By:

Montalent, Pierre;
Joets, Johann;
Frishman, Dmitrij

Publication type:

Article