Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 3

Results: 31

Biomarker detection in the integration of multiple multi-class genomic studies.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 333, doi. 10.1093/bioinformatics/btp669

By:

Shuya Lu;
Jia Li;
Chi Song;
Kui Shen;
Tseng, George C.

Publication type:

Article

sORF finder: a program package to identify small open reading frames with high coding potential.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 399, doi. 10.1093/bioinformatics/btp688

By:

Hanada, Kousuke;
Akiyama, Kenji;
Sakurai, Tetsuya;
Toyoda, Tetsuro;
Shinozaki, Kazuo;
Shin-Han Shiu

Publication type:

Article

Validation of double digest selective label database for sequenced prokaryotic genomes.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 417, doi. 10.1093/bioinformatics/btp675

By:

Terletskiy, Valery;
Tyshchenko, Valentina;
Martinez-Ballesteros, Ilargi;
Garaizar, Javier;
Bikandi, Joseba

Publication type:

Article

CellMC—a multiplatform model compiler for the Cell Broadband Engine and ×86.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 426, doi. 10.1093/bioinformatics/btp662

By:

Caulfield, Emmet;
Hellander, Andreas

Publication type:

Article

Optimization of minimum set of protein–DNA interactions: a quasi exact solution with minimum over-fitting.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 319, doi. 10.1093/bioinformatics/btp664

By:

Temiz, N. A.;
Trapp, A.;
Prokopyev, O. A.;
Camacho, C. J.

Publication type:

Article

FoldAmyloid: a method of prediction of amyloidogenic regions from protein sequence.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 326, doi. 10.1093/bioinformatics/btp691

By:

Garbuzynskiy, Sergiy O.;
Lobanov, Michail Yu.;
Galzitskaya, Oxana V.

Publication type:

Article

Pitfalls of supervised feature selection.

Published in:

2010

By:

Smialowski, Pawel;
Frishman, Dmitrij;
Kramer, Stefan

Publication type:

Letter

DataPflex: a MATLAB-based tool for the manipulation and visualization of multidimensional datasets.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 432, doi. 10.1093/bioinformatics/btp667

By:

Hendriks, Bart S.;
Espelin, Christopher W.

Publication type:

Article

Annotation and merging of SBML models with semanticSBML.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 421, doi. 10.1093/bioinformatics/btp642

By:

Krause, Falko;
Uhlendorf, Jannis;
Lubitz, Timo;
Schulz, Marvin;
Klipp, Edda;
Liebermeister, Wolfram

Publication type:

Article

pegas: an R package for population genetics with an integrated–modular approach.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 419, doi. 10.1093/bioinformatics/btp696

By:

Paradis, Emmanuel

Publication type:

Article

Robust biomarker identification for cancer diagnosis with ensemble feature selection methods.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 392, doi. 10.1093/bioinformatics/btp630

By:

Abeel, Thomas;
Helleputte, Thibault;
Van De Peer, Yves;
Dupont, Pierre;
Saeys, Yvan

Publication type:

Article

Estimating DNA coverage and abundance in metagenomes using a gamma approximation.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 295, doi. 10.1093/bioinformatics/btp687

By:

Hooper, Sean D.;
Dalevi, Daniel;
Pati, Amrita;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 434, doi. 10.1093/bioinformatics/btp556

By:

Andorf, Carson M.;
Lawrence, Carolyn J.;
Harper, Lisa C.;
Schaeffer, Mary L.;
Campbell, Darwin A.;
Sen, Taner Z.

Publication type:

Article

Over-optimism in bioinformatics research.

Published in:

2010

By:

Boulesteix, Anne-Laure

Publication type:

Letter

On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 363, doi. 10.1093/bioinformatics/btp677

By:

Pham, Thang V.;
Piersma, Sander R.;
Warmoes, Marc;
Jimenez, Connie R.

Publication type:

Article

Tmod: toolbox of motif discovery.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 405, doi. 10.1093/bioinformatics/btp681

By:

Hanchang Sun;
Yuan Yuan;
Yibo Wu;
Hui Liu;
Liu, Jun S.;
Hongwei Xie

Publication type:

Article

A new gene selection procedure based on the covariance distance.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 348, doi. 10.1093/bioinformatics/btp672

By:

Rui Hu;
Xing Qiu;
Glazko, Galina

Publication type:

Article

Globally, unrelated protein sequences appear random.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 310, doi. 10.1093/bioinformatics/btp660

By:

Lavelle, Daniel T.;
Pearson, William R.

Publication type:

Article

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 403, doi. 10.1093/bioinformatics/btp670

By:

Meglécz, Emese;
Costedoat, Caroline;
Dubut, Vincent;
Gilles, André;
Malausa, Thibaut;
Pech, Nicolas;
Martin, Jean-François

Publication type:

Article

Protein complex prediction based on simultaneous protein interaction network.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 385, doi. 10.1093/bioinformatics/btp668

By:

Suk Hoon Jung;
Bora Hyun;
Woo-Hyuk Jang;
Hee-Young Hur;
Dong-Soo Han

Publication type:

Article

ChiBE: interactive visualization and manipulation of BioPAX pathway models.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 429, doi. 10.1093/bioinformatics/btp665

By:

Babur, Ozgun;
Dogrusoz, Ugur;
Demir, Emek;
Sander, Chris

Publication type:

Article

webMGR: an online tool for the multiple genome rearrangement problem.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 408, doi. 10.1093/bioinformatics/btp689

By:

Chi Ho Lin;
Hao Zhao;
Lowcay, Sean Harry;
Shahab, Atif;
Bourque, Guillaume

Publication type:

Article

PathGen: a transitive gene pathway generator.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 423, doi. 10.1093/bioinformatics/btp661

By:

Clement, Kendell;
Gustafson, Nathaniel;
Berbert, Amanda;
Carroll, Hyrum;
Merris, Christopher;
Olsen, Ammon;
Clement, Mark;
Snell, Quinn;
Allen, Jared;
Roper, Randall J.

Publication type:

Article

Temporal clustering by affinity propagation reveals transcriptional modules in Arabidopsis thaliana.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 355, doi. 10.1093/bioinformatics/btp673

By:

Kiddle, Steven J.;
Windram, Oliver P. F.;
McHattie, Stuart;
Mead, Andrew;
Beynon, Jim;
Buchanan-Wollaston, Vicky;
Denby, Katherine J.;
Mukherjee, Sach

Publication type:

Article

Quantifying the biological significance of gene ontology biological processes—implications for the analysis of systems-wide data.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 378, doi. 10.1093/bioinformatics/btp663

By:

Chagoyen, Monica;
Pazos, Florencio

Publication type:

Article

HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 302, doi. 10.1093/bioinformatics/btp676

By:

Thanh Le;
Altman, Tom;
Gardiner, Katheleen

Publication type:

Article

DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 414, doi. 10.1093/bioinformatics/btp702

By:

Salari, Keyan;
Tibshirani, Robert;
Pollack, Jonathan R.

Publication type:

Article

Tablet—next generation sequence assembly visualization.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 401, doi. 10.1093/bioinformatics/btp666

By:

Milne, Iain;
Bayer, Micha;
Cardle, Linda;
Shaw, Paul;
Stephen, Gordon;
Wright, Frank;
Marshall, David

Publication type:

Article

Dynamically weighted clustering with noise set.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 341, doi. 10.1093/bioinformatics/btp671

By:

Yijing Shen;
Wei Sun;
Ker-Chau Li

Publication type:

Article

Mixtures of regression models for time course gene expression data: evaluation of initialization and random effects.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 370, doi. 10.1093/bioinformatics/btp686

By:

Scharl, Theresa;
Grün, Bettina;
Leisch, Friedrich

Publication type:

Article

PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 411, doi. 10.1093/bioinformatics/btp674

By:

Watson-Haigh, Nathan S.;
Kadarmideen, Haja N.;
Reverter, Antonio

Publication type:

Article