Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 20

Results: 32

TFInfer: a tool for probabilistic inference of transcription factor activities.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2635, doi. 10.1093/bioinformatics/btq469

By:

Asif, H. M. Shahzad;
Rolfe, Matthew D.;
Green, Jeff;
Lawrence, Neil D.;
Rattray, Magnus;
Sanguinetti, Guido

Publication type:

Article

miRNAkey: a software for microRNA deep sequencing analysis.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2615, doi. 10.1093/bioinformatics/btq493

By:

Ronen, Roy;
Gan, Ido;
Modai, Shira;
Sukacheov, Alona;
Dror, Gideon;
Halperin, Eran;
Shomron, Noam

Publication type:

Article

A cell-based simulation software for multi-cellular systems.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2641, doi. 10.1093/bioinformatics/btq437

By:

Hoehme, Stefan;
Drasdo, Dirk

Publication type:

Article

Simple sequence-based kernels do not predict protein–protein interactions.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2610, doi. 10.1093/bioinformatics/btq483

By:

Yu, Jiantao;
Guo, Maozu;
Needham, Chris J.;
Huang, Yangchao;
Cai, L u;
Westhead, David R.

Publication type:

Article

Structural genomics of histone tail recognition.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2629, doi. 10.1093/bioinformatics/btq491

By:

Wang, Minghua;
Mok, Man Wai;
Harper, Hong;
Lee, Wen Hwa;
Min, Jinrong;
Knapp, Stefan;
Oppermann, Udo;
Marsden, Brian;
Schapira, Matthieu

Publication type:

Article

MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2639, doi. 10.1093/bioinformatics/btq436

By:

Biswas, Ambarish;
Mynampati, Kalyan C.;
Umashankar, Shivshankar;
Reuben, Sheela;
Parab, Gauri;
Rao, Raghuraj;
Kannan, Velayutham S.;
Swarup, Sanjay

Publication type:

Article

A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2501, doi. 10.1093/bioinformatics/btq460

By:

Wang, Jianrong;
Huda, Ahsan;
Lunyak, Victoria V.;
Jordan, I. King

Publication type:

Article

Semi-supervised recursively partitioned mixture models for identifying cancer subtypes.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2578, doi. 10.1093/bioinformatics/btq470

By:

Koestler, Devin C.;
Marsit, Carmen J.;
Christensen, Brock C.;
Karagas, Margaret R.;
Bueno, Raphael;
Sugarbaker, David J.;
Kelsey, Karl T.;
Houseman, E. Andres

Publication type:

Article

Detecting two-locus associations allowing for interactions in genome-wide association studies.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2517, doi. 10.1093/bioinformatics/btq486

By:

Xiang Wan;
Can Yang;
Qiang Yang;
Hong Xue;
Nelson L. S. Tang;
Weichuan Yu

Publication type:

Article

Circoletto: visualizing sequence similarity with Circos.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2620, doi. 10.1093/bioinformatics/btq484

By:

Darzentas, Nikos

Publication type:

Article

Deep and wide digging for binding motifs in ChIP-Seq data.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2622, doi. 10.1093/bioinformatics/btq488

By:

Kulakovskiy, I. V.;
Boeva, V. A.;
Favorov, A. V.;
Makeev, V. J.

Publication type:

Article

METAREP: JCVI metagenomics reports—an open source tool for high-performance comparative metagenomics.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2631, doi. 10.1093/bioinformatics/btq455

By:

Goll, Johannes;
Rusch, Douglas B.;
Tanenbaum, David M.;
Thiagarajan, Mathangi;
Li, Kelvin;
Methé, Barbara A.;
Yooseph, Shibu

Publication type:

Article

Improving performances of suboptimal greedy iterative biclustering heuristics via localization.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2594, doi. 10.1093/bioinformatics/btq473

By:

Erten, Cesim;
Sözdinler, Melih

Publication type:

Article

RBSDesigner: software for designing synthetic ribosome binding sites that yields a desired level of protein expression.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2633, doi. 10.1093/bioinformatics/btq458

By:

Na, Dokyun;
Lee, Doheon

Publication type:

Article

DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2637, doi. 10.1093/bioinformatics/btq471

By:

Liu, Bao-Hong;
Yu, Hui;
Tu, Kang;
Li, Chun;
Li, Yi-Xue;
Li, Yuan-Yuan

Publication type:

Article

Reptile: representative tiling for short read error correction.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2526, doi. 10.1093/bioinformatics/btq468

By:

Yang, Xiao;
Dorman, Karin S.;
Aluru, Srinivas

Publication type:

Article

Ontology- and graph-based similarity assessment in biological networks.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2643, doi. 10.1093/bioinformatics/btq477

By:

Wang, Haiying;
Zheng, Huiru;
Azuaje, Francisco

Publication type:

Article

Module-based prediction approach for robust inter-study predictions in microarray data.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2586, doi. 10.1093/bioinformatics/btq472

By:

Mi, Zhibao;
Shen, Kui;
Song, Nan;
Cheng, Chunrong;
Song, Chi;
Kaminski, Naftali;
Tseng, George C.

Publication type:

Article

A discriminatory function for prediction of protein–DNA interactions based on alpha shape modeling.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2541, doi. 10.1093/bioinformatics/btq478

By:

Zhou, Weiqiang;
Yan, Hong

Publication type:

Article

BioRuby: bioinformatics software for the Ruby programming language.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2617, doi. 10.1093/bioinformatics/btq475

By:

Goto, Naohisa;
Prins, Pjotr;
Nakao, Mitsuteru;
Bonnal, Raoul;
Aerts, Jan;
Katayama, Toshiaki

Publication type:

Article

GASSST: global alignment short sequence search tool.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2534, doi. 10.1093/bioinformatics/btq485

By:

Rizk, Guillaume;
Lavenier, Dominique

Publication type:

Article

OpenStructure: a flexible software framework for computational structural biology.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2626, doi. 10.1093/bioinformatics/btq481

By:

Biasini, Marco;
Mariani, Valerio;
Haas, Jürgen;
Scheuber, Stefan;
Schenk, Andreas D.;
Schwede, Torsten;
Philippsen, Ansgar

Publication type:

Article

2Struc: the secondary structure server.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2624, doi. 10.1093/bioinformatics/btq480

By:

Klose, D. P.;
Wallace, B. A.;
Janes, Robert W.

Publication type:

Article

ICPS: an integrative cancer profiler system.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2649, doi. 10.1093/bioinformatics/btq487

By:

Xin-yu Zhang;
Lin Shi;
Yan Liu;
Feng Tian;
Hai-tao Zhao;
Xiao-ping Miao;
Ming-lie Huang;
Xiao-yan Zhu

Publication type:

Article

Preferential use of protein domain pairs as interaction mediators: order and transitivity.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2564, doi. 10.1093/bioinformatics/btq495

By:

Itzhaki, Zohar;
Akiva, Eyal;
Margalit, Hanah

Publication type:

Article

A study of the efficiency of pooling in haplotype estimation.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2556, doi. 10.1093/bioinformatics/btq492

By:

Anthony Y. C. Kuk;
Jinfeng Xu;
Yaning Yang

Publication type:

Article

Probabilistic analysis of gene expression measurements from heterogeneous tissues.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2571, doi. 10.1093/bioinformatics/btq406

By:

Erkkilä, Timo;
Lehmusvaara, Saara;
Ruusuvuori, Pekka;
Visakorpi, Tapio;
Shmulevich, Ilya;
Lähdesmäki, Harri

Publication type:

Article

Obtaining better quality final clustering by merging a collection of clusterings.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2645, doi. 10.1093/bioinformatics/btq489

By:

Mimaroglu, Selim;
Erdil, Ertunc

Publication type:

Article

Identification of protein binding surfaces using surface triplet propensities.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2549, doi. 10.1093/bioinformatics/btq490

By:

Mehio, Wissam;
Kemp, Graham J. L.;
Taylor, Paul;
Walkinshaw, Malcolm D.

Publication type:

Article

DRIMM-Synteny: decomposing genomes into evolutionary conserved segments.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2509, doi. 10.1093/bioinformatics/btq465

By:

Pham, Son K.;
Pevzner, Pavel A.

Publication type:

Article

The Chemical Translation Service—a web-based tool to improve standardization of metabolomic reports.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2647, doi. 10.1093/bioinformatics/btq476

By:

Wohlgemuth, Gert;
Haldiya, Pradeep Kumar;
Willighagen, Egon;
Kind, Tobias;
Fiehn, Oliver

Publication type:

Article

Automated construction and analysis of the design space for biochemical systems.

Published in:

Bioinformatics, 2010, v. 26, n. 20, p. 2601, doi. 10.1093/bioinformatics/btq479

By:

Fasani, Rick A.;
Savageau, Michael A.

Publication type:

Article