Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 2

Results: 29

AQUA: automated quality improvement for multiple sequence alignments.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 263, doi. 10.1093/bioinformatics/btp651

By:

Muller, Jean;
Creevey, Christopher J.;
Thompson, Julie D.;
Arendt, Detlev;
Bork, Peer

Publication type:

Article

Target prediction and a statistical sampling algorithm for RNA–RNA interaction.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 175, doi. 10.1093/bioinformatics/btp635

By:

Huang, Fenix W. D.;
Jing Qin;
Reidys, Christian M.;
Stadler, Peter F.

Publication type:

Article

Pathway analysis using random forests with bivariate node-split for survival outcomes.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 250, doi. 10.1093/bioinformatics/btp640

By:

Pang, Herbert;
Datta, Debayan;
Hongyu Zhao

Publication type:

Article

Identification of substrates for Ser/Thr kinases using residue-based statistical pair potentials.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 189, doi. 10.1093/bioinformatics/btp633

By:

Kumar, Narendra;
Mohanty, Debasisa

Publication type:

Article

hPDI: a database of experimental human protein–DNA interactions.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 287, doi. 10.1093/bioinformatics/btp631

By:

Zhi Xie;
Shaohui Hu;
Blackshaw, Seth;
Heng Zhu;
Jiang Qian

Publication type:

Article

MAVEN: a tool for visualization and functional analysis of genome-wide association results.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 270, doi. 10.1093/bioinformatics/btp641

By:

Narayanan, Kanchana;
Jing Li

Publication type:

Article

LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 290, doi. 10.1093/bioinformatics/btp645

By:

Mochida, Keiichi;
Yoshida, Takuhiro;
Sakurai, Tetsuya;
Yamaguchi-Shinozaki, Kazuko;
Shinozaki, Kazuo;
Lam-Son Phan Tran

Publication type:

Article

PyNAST: a flexible tool for aligning sequences to a template alignment.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 266, doi. 10.1093/bioinformatics/btp636

By:

Caporaso, J. Gregory;
Bittinger, Kyle;
Bushman, Frederic D.;
DeSantis, Todd Z.;
Andersen, Gary L.;
Knight, Rob

Publication type:

Article

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.

Published in:

2010

By:

Shen, Ronglai;
Olshen, Adam B.;
Ladanyi, Marc

Publication type:

Correction Notice

Bayesian model selection for characterizing genomic imprinting effects and patterns.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 235, doi. 10.1093/bioinformatics/btp620

By:

Runqing Yang;
Xin Wang;
Zeyuan Wu;
Prows, Daniel R.;
Min Lin

Publication type:

Article

EGAN: exploratory gene association networks.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 285, doi. 10.1093/bioinformatics/btp656

By:

Paquette, Jesse;
Tokuyasu, Taku

Publication type:

Article

The Gene Interaction Miner: a new tool for data mining contextual information for protein–protein interaction analysis.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 283, doi. 10.1093/bioinformatics/btp652

By:

Ikin, Aaron;
Riveros, Carlos;
Moscato, Pablo;
Mendes, Alexandre

Publication type:

Article

CMap3D: a 3D visualization tool for comparative genetic maps.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 273, doi. 10.1093/bioinformatics/btp646

By:

Duran, Chris;
Boskovic, Zoran;
Imelfort, Michael;
Batley, Jacqueline;
Hamilton, Nicholas A.;
Edwards, David

Publication type:

Article

Ceres: software for the integrated analysis of transcription factor binding sites and nucleosome positions in Saccharomyces cerevisiae.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 168, doi. 10.1093/bioinformatics/btp657

By:

Morris, Robert T.;
O'Connor, Timothy R.;
Wyrick, John J.

Publication type:

Article

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 182, doi. 10.1093/bioinformatics/btp629

By:

McGuffin, Liam J.;
Roche, Daniel B.

Publication type:

Article

SCAN: SNP and copy number annotation.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 259, doi. 10.1093/bioinformatics/btp644

By:

Gamazon, Eric R.;
Wei Zhang;
Konkashbaev, Anuar;
Shiwei Duan;
Kistner, Emily O.;
Nicolae, Dan L.;
Dolan, M. Eileen;
Cox, Nancy J.

Publication type:

Article

CYSTM, a novel cysteine-rich transmembrane module with a role in stress tolerance across eukaryotes.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 149, doi. 10.1093/bioinformatics/btp647

By:

Venancio, Thiago M.;
Aravind, L.

Publication type:

Article

Expertomica Cells: analysis of cell monolayer development.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 278, doi. 10.1093/bioinformatics/btp637

By:

Tomáš, Levitner;
Timr, Štepán;
Štys, Dalibor

Publication type:

Article

MIRAGAA—a methodology for finding coordinated effects of microRNA expression changes and genome aberrations in cancer.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 161, doi. 10.1093/bioinformatics/btp654

By:

Gaire, Raj K.;
Bailey, James;
Bearfoot, Jennifer;
Campbell, Ian G.;
Stuckey, Peter J.;
Haviv, Izhak

Publication type:

Article

VIBE 2.0: Visual Integration for Bayesian Evaluation.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 280, doi. 10.1093/bioinformatics/btp639

By:

Beagley, Nathaniel;
Stratton, Kelly G.;
Webb-Robertson, Bobbie-Jo M.

Publication type:

Article

Joint estimation of DNA copy number from multiple platforms.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 153, doi. 10.1093/bioinformatics/btp653

By:

Zhang, Nancy R.;
Senbabaoglu, Yasin;
Li, Jun Z.

Publication type:

Article

MADS+: discovery of differential splicing events from Affymetrix exon junction array data.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 268, doi. 10.1093/bioinformatics/btp643

By:

Shihao Shen;
Warzecha, Claude C.;
Carstens, Russ P.;
Yi Xing

Publication type:

Article

Quantifying uncertainty in genotype calls.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 242, doi. 10.1093/bioinformatics/btp624

By:

Carvalho, Benilton S.;
Louis, Thomas A.;
Irizarry, Rafael A.

Publication type:

Article

Bayesian variable selection for disease classification using gene expression data.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 215, doi. 10.1093/bioinformatics/btp638

By:

Yang Ai-Jun;
Song Xin-Yuan

Publication type:

Article

Co-expression networks: graph properties and topological comparisons.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 205, doi. 10.1093/bioinformatics/btp632

By:

Xulvi-Brunet, Ramon;
Hongzhe Li

Publication type:

Article

A personalized microRNA microarray normalization method using a logistic regression model.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 228, doi. 10.1093/bioinformatics/btp655

By:

Bin Wang;
Xiao-Feng Wang;
Howell, Paul;
Xuemin Qian;
Kun Huang;
Riker, Adam I.;
Jingfang Ju;
Yaguang Xi

Publication type:

Article

PerturbationAnalyzer: a tool for investigating the effects of concentration perturbation on protein interaction networks.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 275, doi. 10.1093/bioinformatics/btp634

By:

Fei Li;
Peng Li;
Wenjian Xu;
Yuxing Peng;
Xiaochen Bo;
Shengqi Wang

Publication type:

Article

Kinase selectivity potential for inhibitors targeting the ATP binding site: a network analysis.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 198, doi. 10.1093/bioinformatics/btp650

By:

Danzhi Huang;
Ting Zhou;
Lafleur, Karine;
Nevado, Cristina;
Caflisch, Amedeo

Publication type:

Article

mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets.

Published in:

Bioinformatics, 2010, v. 26, n. 2, p. 223, doi. 10.1093/bioinformatics/btp649

By:

Ritchie, William;
Flamant, Stephane;
Rasko, John E. J.

Publication type:

Article