Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 18

Results: 67

Integrating genome assemblies with MAIA.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i433, doi. 10.1093/bioinformatics/btq366

By:

Nijkamp, Jurgen;
Winterbach, Wynand;
Van den Broek, Marcel;
Daran, Jean-Marc;
Reinders, Marcel;
De Ridder, Dick

Publication type:

Article

is-rSNP: a novel technique for in silico regulatory SNP detection.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i524, doi. 10.1093/bioinformatics/btq378

By:

Macintyre, Geoff;
Bailey, James;
Haviv, Izhak;
Kowalczyk, Adam

Publication type:

Article

Vorescore—fold recognition improved by rescoring of protein structure models.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i474, doi. 10.1093/bioinformatics/btq369

By:

Csaba, Gergely;
Zimmer, Ralf

Publication type:

Article

Dynamic deterministic effects propagation networks: learning signalling pathways from longitudinal protein array data.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i596, doi. 10.1093/bioinformatics/btq385

By:

Bender, Christian;
Henjes, Frauke;
Fröhlich, Holger;
Wiemann, Stefan;
Korf, Ulrike;
Beißbarth, Tim

Publication type:

Article

De-correlating expression in gene-set analysis.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i511, doi. 10.1093/bioinformatics/btq380

By:

Dougu Nam

Publication type:

Article

Ontology for medicinal materials based on traditional Korean medicine.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2359, doi. 10.1093/bioinformatics/btq424

By:

Hyunchul Jang;
Jinhyun Kim;
Sang-Kyun Kim;
Chul Kim;
Soon-Hee Bae;
Kim, Anna;
Dong-Myung Eom;
Mi-Young Song

Publication type:

Article

Chromaligner: a web server for chromatogram alignment.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2338, doi. 10.1093/bioinformatics/btq337

By:

San-Yuan Wang;
Tsung-Jung Ho;
Ching-Hua Kuo;
Tseng, Yufeng J.

Publication type:

Article

Prototypes of elementary functional loops unravel evolutionary connections between protein functions.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i497, doi. 10.1093/bioinformatics/btq374

By:

Goncearenco, Alexander;
Berezovsky, Igor N.

Publication type:

Article

Computational analysis of tissue-specific gene networks: application to murine retinal functional studies.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2289, doi. 10.1093/bioinformatics/btq408

By:

Jianfei Hu;
Jun Wan;
Hackler Jr., Laszlo;
Zack, Donald J.;
Jiang Qian

Publication type:

Article

MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2226, doi. 10.1093/bioinformatics/btq329

By:

Mathelier, Anthony;
Carbone, Alessandra

Publication type:

Article

A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2242, doi. 10.1093/bioinformatics/btq403

By:

Penghao Wang;
Pengyi Yang;
Arthur, Jonathan;
Yang, Jean Yee Hwa

Publication type:

Article

Cytoscape Web: an interactive web-based network browser.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2347, doi. 10.1093/bioinformatics/btq430

By:

Lopes, Christian T.;
Franz, Max;
Kazi, Farzana;
Donaldson, Sylva L.;
Morris, Quaid;
Bader, Gary D.

Publication type:

Article

A graphical method for reducing and relating models in systems biology.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i575, doi. 10.1093/bioinformatics/btq388

By:

Gay, Steven;
Soliman, Sylvain;
Fages, François

Publication type:

Article

Classification of ncRNAs using position and size information in deep sequencing data.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i426, doi. 10.1093/bioinformatics/btq363

By:

Erhard, Florian;
Zimmer, Ralf

Publication type:

Article

Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i653, doi. 10.1093/bioinformatics/btq398

By:

Suratanee, Apichat;
Rebhan, Ilka;
Matula, Petr;
Kumar, Anil;
Kaderali, Lars;
Rohr, Karl;
Bartenschlager, Ralf;
Eils, Roland;
König, Rainer

Publication type:

Article

Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i645, doi. 10.1093/bioinformatics/btq394

By:

Yanjun Qi;
Tastan, Oznur;
Carbonell, Jaime G.;
Klein-Seetharaman, Judith;
Weston, Jason

Publication type:

Article

Solenoid and non-solenoid protein recognition using stationary wavelet packet transform.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i467, doi. 10.1093/bioinformatics/btq371

By:

An Vo;
Nha Nguyen;
Heng Huang

Publication type:

Article

Bayesian experts in exploring reaction kinetics of transcription circuits.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i589, doi. 10.1093/bioinformatics/btq389

By:

Yoshida, Ryo;
Saito, Masaya M.;
Nagao, Hiromichi;
Higuchi, Tomoyuki

Publication type:

Article

iAlign: a method for the structural comparison of protein–protein interfaces.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2259, doi. 10.1093/bioinformatics/btq404

By:

Mu Gao;
Skolnick, Jeffrey

Publication type:

Article

C-It: a knowledge database for tissue-enriched genes.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2328, doi. 10.1093/bioinformatics/btq417

By:

Gellert, Pascal;
Jenniches, Katharina;
Braun, Thomas;
Uchida, Shizuka

Publication type:

Article

Discovering graphical Granger causality using the truncating lasso penalty.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i517, doi. 10.1093/bioinformatics/btq377

By:

Shojaie, Ali;
Michailidis, George

Publication type:

Article

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2354, doi. 10.1093/bioinformatics/btq415

By:

Rocca-Serra, Philippe;
Brandizi, Marco;
Maguire, Eamonn;
Sklyar, Nataliya;
Taylor, Chris;
Begley, Kimberly;
Field, Dawn;
Harris, Stephen;
Hide, Winston;
Hofmann, Oliver;
Neumann, Steffen;
Sterk, Peter;
Tong, Weida;
Sansone, Susanna-Assunta

Publication type:

Article

OWL2Perl: creating Perl modules from OWL class definitions.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2357, doi. 10.1093/bioinformatics/btq416

By:

Kawas, Edward;
Wilkinson, Mark D.

Publication type:

Article

LocusZoom: regional visualization of genome-wide association scan results.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2336, doi. 10.1093/bioinformatics/btq419

By:

Pruim, Randall J.;
Welch, Ryan P.;
Sanna, Serena;
Teslovich, Tanya M.;
Chines, Peter S.;
Gliedt, Terry P.;
Boehnke, Michael;
Abecasis, Gonçalo R.;
Willer, Cristen J.

Publication type:

Article

PathwayAccess: CellDesigner plugins for pathway databases.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2345, doi. 10.1093/bioinformatics/btq423

By:

Van Hemert, John L.;
Dickerson, Julie A.

Publication type:

Article

A predictor for toxin-like proteins exposes cell modulator candidates within viral genomes.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i482, doi. 10.1093/bioinformatics/btq375

By:

Naamati, Guy;
Askenazi, Manor;
Linial, Michal

Publication type:

Article

Editing, validating and translating of SBGN maps.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2340, doi. 10.1093/bioinformatics/btq407

By:

Czauderna, Tobias;
Klukas, Christian;
Schreiber, Falk

Publication type:

Article

Analyzing taxonomic classification using extensible Markov models.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2235, doi. 10.1093/bioinformatics/btq349

By:

Kotamarti, Rao M.;
Hahsler, Michael;
Raiford, Douglas;
McGee, Monnie;
Dunham, Margaret H.

Publication type:

Article

Discovering drug–drug interactions: a text-mining and reasoning approach based on properties of drug metabolism.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i547, doi. 10.1093/bioinformatics/btq382

By:

Tari, Luis;
Anwar, Saadat;
Liang, Shanshan;
Cai, James;
Baral, Chitta

Publication type:

Article

Characteristics of 454 pyrosequencing data—enabling realistic simulation with flowsim.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i420, doi. 10.1093/bioinformatics/btq365

By:

Balzer, Susanne;
Malde, Ketil;
Lanzén, Anders;
Sharma, Animesh;
Jonassen, Inge

Publication type:

Article

Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i531, doi. 10.1093/bioinformatics/btq376

By:

Cannistraci, Carlo Vittorio;
Ravasi, Timothy;
Montevecchi, Franco Maria;
Ideker, Trey;
Alessio, Massimo

Publication type:

Article

Parsimony and likelihood reconstruction of human segmental duplications.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i446, doi. 10.1093/bioinformatics/btq368

By:

Kahn, Crystal L.;
Hristov, Borislav H.;
Raphael, Benjamin J.

Publication type:

Article

Exposing the co-adaptive potential of protein–protein interfaces through computational sequence design.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2266, doi. 10.1093/bioinformatics/btq412

By:

Fromer, Menachem;
Linial, Michal

Publication type:

Article

A fast algorithm for exact sequence search in biological sequences using polyphase decomposition.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i414, doi. 10.1093/bioinformatics/btq364

By:

Srikantha, Abhilash;
Bopardikar, Ajit S.;
Kaipa, Kalyan Kumar;
Venkataraman, Parthasarathy;
Kyusang Lee;
TaeJin Ahn;
Narayanan, Rangavittal

Publication type:

Article

Author Index.

Published in:: Bioinformatics, 2010, v. 26, n. 18, p. i666, doi. 10.1093/bioinformatics/btq505
Publication type:: Article

genoPlotR: comparative gene and genome visualization in R.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2334, doi. 10.1093/bioinformatics/btq413

By:

Guy, Lionel;
Roat Kultima, Jens;
Andersson, Siv G. E.

Publication type:

Article

A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2349, doi. 10.1093/bioinformatics/btq427

By:

Fujita, André;
Kojima, Kaname;
Patriota, Alexandre G.;
Sato, João R.;
Severino, Patricia;
Miyano, Satoru

Publication type:

Article

BioXSD: the common data-exchange format for everyday bioinformatics web services.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i540, doi. 10.1093/bioinformatics/btq391

By:

Kalaš, Matúš;
Puntervoll, Pål;
Joseph, Alexandre;
Bartaševičiūtė, Edita;
Töpfer, Armin;
Venkataraman, Prabakar;
Pettifer, Steve;
Bryne, Jan Christian;
Ison, Jon;
Blanchet, Christophe;
Rapacki, Kristoffer;
Jonassen, Inge

Publication type:

Article

Multiple gene expression profile alignment for microarray time-series data clustering.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2281, doi. 10.1093/bioinformatics/btq422

By:

Subhani, Numanul;
Rueda, Luis;
Ngom, Alioune;
Burden, Conrad J.

Publication type:

Article

RefProtDom: a protein database with improved domain boundaries and homology relationships.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2361, doi. 10.1093/bioinformatics/btq426

By:

Gonzalez, Mileidy W.;
Pearson, William R.

Publication type:

Article

ECCB 2010 Organization.

Published in:: Bioinformatics, 2010, v. 26, n. 18, p. i409, doi. 10.1093/bioinformatics/btq499
Publication type:: Article

How threshold behaviour affects the use of subgraphs for network comparison.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i611, doi. 10.1093/bioinformatics/btq386

By:

Rito, Tiago;
Zi Wang;
Deane, Charlotte M.;
Reinert, Gesine

Publication type:

Article

Towards optimal alignment of protein structure distance matrices.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2273, doi. 10.1093/bioinformatics/btq420

By:

Wohlers, Inken;
Domingues, Francisco S.;
Klau, Gunnar W.

Publication type:

Article

Discriminatory power of RNA family models.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i453, doi. 10.1093/bioinformatics/btq370

By:

Siederdissen, Christian Höner zu;
Hofacker, Ivo L.

Publication type:

Article

Utopia documents: linking scholarly literature with research data.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i568, doi. 10.1093/bioinformatics/btq383

By:

Attwood, T. K.;
Kell, D. B.;
McDermott, P.;
Marsh, J.;
Pettifer, S. R.;
Thorne, D.

Publication type:

Article

Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i638, doi. 10.1093/bioinformatics/btq395

By:

Bonnet, Eric;
Michoel, Tom;
Van de Peer, Yves

Publication type:

Article

Improving disease gene prioritization using the semantic similarity of Gene Ontology terms.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i561, doi. 10.1093/bioinformatics/btq384

By:

Schlicker, Andreas;
Lengauer, Thomas;
Albrecht, Mario

Publication type:

Article

Efficient parameter search for qualitative models of regulatory networks using symbolic model checking.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i603, doi. 10.1093/bioinformatics/btq387

By:

Batt, Gregory;
Page, Michel;
Cantone, Irene;
Goessler, Gregor;
Monteiro, Pedro;
de Jong, Hidde

Publication type:

Article

Maximum likelihood estimation of locus-specific mutation rates in Y-chromosome short tandem repeats.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i440, doi. 10.1093/bioinformatics/btq367

By:

Ravid-Amir, Osnat;
Rosset, Saharon

Publication type:

Article

Candidate gene prioritization based on spatially mapped gene expression: an application to XLMR.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. i618, doi. 10.1093/bioinformatics/btq396

By:

Piro, Rosario M.;
Molineris, Ivan;
Ala, Ugo;
Provero, Paolo;
Di Cunto, Ferdinando

Publication type:

Article