Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 16

Results: 26

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1958, doi. 10.1093/bioinformatics/btq338

By:

Yongchao Liu;
Schmidt, Bertil;
Maskell, Douglas L.

Publication type:

Article

Rapid match-searching for gene silencing assessment.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1932, doi. 10.1093/bioinformatics/btq318

By:

Horn, Mark E. T.;
Waterhouse, Peter M.

Publication type:

Article

Single feature polymorphism detection using recombinant inbred line microarray expression data.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1983, doi. 10.1093/bioinformatics/btq316

By:

Xinping Cui;
Na You;
Girke, Thomas;
Michelmore, Richard;
Van Deynze, Allen

Publication type:

Article

Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1975, doi. 10.1093/bioinformatics/btq319

By:

Fuxiao Xin;
Myers, Steven;
Yong Fuga Li;
Cooper, David N.;
Mooney, Sean D.;
Radivojac, Predrag

Publication type:

Article

Bridges: a tool for identifying local similarities in long sequences.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2055, doi. 10.1093/bioinformatics/btq320

By:

Kondrashov, Alexey S.;
Assis, Raquel

Publication type:

Article

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2064, doi. 10.1093/bioinformatics/btq322

By:

Ewing, Gregory;
Hermisson, Joachim

Publication type:

Article

A probabilistic framework for aligning paired-end RNA-seq data.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1950, doi. 10.1093/bioinformatics/btq336

By:

Yin Hu;
Kai Wang;
Xiaping He;
Chiang, Derek Y.;
Prins, Jan F.;
Jinze Liu

Publication type:

Article

Over-optimism in bioinformatics: an illustration.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1990, doi. 10.1093/bioinformatics/btq323

By:

Jelizarow, Monika;
Guillemot, Vincent;
Tenenhaus, Arthur;
Strimmer, Korbinian;
Boulesteix, Anne-Laure

Publication type:

Article

Deciphering subcellular processes in live imaging datasets via dynamic probabilistic networks.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2029, doi. 10.1093/bioinformatics/btq331

By:

Letinic, Kresimir;
Sebastian, Rafael;
Barthel, Andrew;
Toomre, Derek

Publication type:

Article

Ontogenomic study of the relationship between number of gene splice variants and GO categorization.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1945, doi. 10.1093/bioinformatics/btq335

By:

Kahn, Ari B.;
Zeeberg, Barry R.;
Ryan, Michael C.;
Jamison, D. Curtis;
Rockoff, David M.;
Pommier, Yves;
Weinstein, John N.

Publication type:

Article

A highly accurate statistical approach for the prediction of transmembrane β-barrels.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1965, doi. 10.1093/bioinformatics/btq308

By:

Freeman Jr., Thomas C.;
Wimley, William C.

Publication type:

Article

Assemble: an interactive graphical tool to analyze and build RNA architectures at the 2D and 3D levels.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2057, doi. 10.1093/bioinformatics/btq321

By:

Jossinet, Fabrice;
Ludwig, Thomas E.;
Westhof, Eric

Publication type:

Article

CplexA: a Mathematica package to study macromolecular-assembly control of gene expression.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2060, doi. 10.1093/bioinformatics/btq328

By:

Vilar, Jose M. G.;
Saiz, Leonor

Publication type:

Article

Modeling and analyzing complex biological networks incooperating experimental information on both network topology and stable states.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2037, doi. 10.1093/bioinformatics/btq333

By:

Yi Ming Zou

Publication type:

Article

Savant: genome browser for high-throughput sequencing data.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1938, doi. 10.1093/bioinformatics/btq332

By:

Fiume, Marc;
Williams, Vanessa;
Brook, Andrew;
Brudno, Michael

Publication type:

Article

A new method for designing degenerate primers and its use in the identification of sequences in Brachiaria showing similarity to apomixis-associated genes.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2053, doi. 10.1093/bioinformatics/btq312

By:

Gorrón, Eduardo;
Rodríguez, Fausto;
Bernal, Diana;
Rodriguez-Rojas, Luis Miguel;
Bernal, Adriana;
Restrepo, Silvia;
Tohme, Joe

Publication type:

Article

ExpressionView—an interactive viewer for modules identified in gene expression data.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2062, doi. 10.1093/bioinformatics/btq334

By:

Lüscher, Andreas;
Csárdi, Gábor;
de Lachapelle, Aitana Morton;
Kutalik, Zoltán;
Peter, Bastian;
Bergmann, Sven

Publication type:

Article

Causal relationship inference for a large-scale cellular network.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2020, doi. 10.1093/bioinformatics/btq325

By:

Tong Zhou;
Ya-Li Wang

Publication type:

Article

Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1927, doi. 10.1093/bioinformatics/btq326

By:

Kopec, Klaus O.;
Alva, Vikram;
Lupas, Andrei N.

Publication type:

Article

Molecular signatures-based prediction of enzyme promiscuity.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2012, doi. 10.1093/bioinformatics/btq317

By:

Carbonell, Pablo;
Faulon, Jean-Loup

Publication type:

Article

cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2051, doi. 10.1093/bioinformatics/btq299

By:

Fengfeng Zhou;
Ying Xu

Publication type:

Article

EpiTOP—a proteochemometric tool for MHC class II binding prediction.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2066, doi. 10.1093/bioinformatics/btq324

By:

Dimitrov, Ivan;
Garnev, Panayot;
Flower, Darren R.;
Doytchinova, Irini

Publication type:

Article

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 1999, doi. 10.1093/bioinformatics/btq327

By:

Clark, Taane G.;
Campino, Susana G.;
Anastasi, Elisa;
Auburn, Sarah;
Teo, Yik Y.;
Small, Kerrin;
Rockett, Kirk A.;
Kwiatkowski, Dominic P.;
Holmes, Christopher C.

Publication type:

Article

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2069, doi. 10.1093/bioinformatics/btq330

By:

McLaren, William;
Pritchard, Bethan;
Rios, Daniel;
Yuan Chen;
Flicek, Paul;
Cunningham, Fiona

Publication type:

Article

Uniformly curated signaling pathways reveal tissue-specific cross-talks and support drug target discovery.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2042, doi. 10.1093/bioinformatics/btq310

By:

Korcsmáros, Tamás;
Farkas, Illés J.;
Szalay, Máté S.;
Rovó, Petra;
Fazekas, Dávid;
Spiró, Zoltán;
Böde, Csaba;
Lenti, Katalin;
Vellai, Tibor;
Csermely, Péter

Publication type:

Article

A Poisson model for random multigraphs.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2004, doi. 10.1093/bioinformatics/btq309

By:

Ranola, John M. O.;
Ahn, Sangtae;
Sehl, Mary;
Smith, Desmond J.;
Lange, Kenneth

Publication type:

Article