Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 13

Results: 19

Learning combinatorial transcriptional dynamics from gene expression data.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1623, doi. 10.1093/bioinformatics/btq244

By:

Opper, Manfred;
Sanguinetti, Guido

Publication type:

Article

The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1669, doi. 10.1093/bioinformatics/btq243

By:

Junier, Thomas;
Zdobnov, Evgeny M.

Publication type:

Article

Modeling RNA loops using sequence homology and geometric constraints.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1671, doi. 10.1093/bioinformatics/btq236

By:

Schudoma, Christian;
May, Patrick;
Walther, Dirk

Publication type:

Article

Classification of DNA sequences using Bloom filters.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1595, doi. 10.1093/bioinformatics/btq230

By:

Stranneheim, Henrik;
Käller, Max;
Allander, Tobias;
Andersson, Björn;
Arvestad, Lars;
Lundeberg, Joakim

Publication type:

Article

Discover regulatory DNA elements using chromatin signatures and artificial neural network.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1579, doi. 10.1093/bioinformatics/btq248

By:

Firpi, Hiram A.;
Ucar, Duygu;
Kai Tan

Publication type:

Article

Semantic integration of data on transcriptional regulation.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1651, doi. 10.1093/bioinformatics/btq231

By:

Baitaluk, Michael;
Ponomarenko, Julia

Publication type:

Article

Polynomial algebra of discrete models in systems biology.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1637, doi. 10.1093/bioinformatics/btq240

By:

Veliz-Cuba, Alan;
Jarrah, Abdul Salam;
Laubenbacher, Reinhard

Publication type:

Article

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1608, doi. 10.1093/bioinformatics/btq249

By:

Yu, Nancy Y.;
Wagner, James R.;
Laird, Matthew R.;
Melli, Gabor;
Rey, Sébastien;
Lo, Raymond;
Phuong Dao;
Sahinalp, S. Cenk;
Ester, Martin;
Foster, Leonard J.;
Brinkman, Fiona S. L.

Publication type:

Article

Machine learning based prediction for peptide drift times in ion mobility spectrometry.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1601, doi. 10.1093/bioinformatics/btq245

By:

Shah, Anuj R.;
Agarwal, Khushbu;
Baker, Erin S.;
Singhal, Mudita;
Mayampurath, Anoop M.;
Ibrahim, Yehia M.;
Kangas, Lars J.;
Monroe, Matthew E.;
Rui Zhao;
Belov, Mikhail E.;
Anderson, Gordon A.;
Smith, Richard D.

Publication type:

Article

Predicting post-translational lysine acetylation using support vector machines.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1666, doi. 10.1093/bioinformatics/btq260

By:

Gnad, Florian;
Shubin Ren;
Choudhary, Chunaram;
Cox, Jürgen;
Mann, Matthias

Publication type:

Article

Repitools: an R package for the analysis of enrichment-based epigenomic data.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1662, doi. 10.1093/bioinformatics/btq247

By:

Statham, Aaron L.;
Strbenac, Dario;
Coolen, Marcel W.;
Stirzaker, Clare;
Clark, Susan J.;
Robinson, Mark D.

Publication type:

Article

Automated analysis of protein subcellular location in time series images.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1630, doi. 10.1093/bioinformatics/btq239

By:

Yanhua Hu;
Osuna-Highley, Elvira;
Juchang Hua;
Nowicki, Theodore Scott;
Stolz, Robert;
McKayle, Camille;
Murphy, Robert F.

Publication type:

Article

CHOYCE: a web server for constrained homology modelling with cryoEM maps.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1673, doi. 10.1093/bioinformatics/btq237

By:

Rawi, Reda;
Whitmore, Lee;
Topf, Maya

Publication type:

Article

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1644, doi. 10.1093/bioinformatics/btq241

By:

Dong Wang;
Juan Wang;
Ming Lu;
Fei Song;
Qinghua Cui

Publication type:

Article

SensSB: a software toolbox for the development and sensitivity analysis of systems biology models.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1675, doi. 10.1093/bioinformatics/btq242

By:

Rodriguez-Fernandez, Maria;
Banga, Julio R.

Publication type:

Article

Prediction of protein–RNA binding sites by a random forest method with combined features.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1616, doi. 10.1093/bioinformatics/btq253

By:

Zhi-Ping Liu;
Ling-Yun Wu;
Yong Wang;
Xiang-Sun Zhang;
Luonan Chen

Publication type:

Article

Interactive software tool to comprehend the calculation of optimal sequence alignments with dynamic programming.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1664, doi. 10.1093/bioinformatics/btq252

By:

Ibarra, Ignacio L.;
Melo, Francisco

Publication type:

Article

A support vector machine model for the prediction of proteotypic peptides for accurate mass and time proteomics.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1677, doi. 10.1093/bioinformatics/btq251

By:

Webb-Robertson, Bobbie-Jo M.;
Cannon, William R.;
Oehmen, Christopher S.;
Shah, Anuj R.;
Gurumoorthi, Vidhya;
Lipton, Mary S.;
Waters, Katrina M.

Publication type:

Article

Pathgroups, a dynamic data structure for genome reconstruction problems.

Published in:

Bioinformatics, 2010, v. 26, n. 13, p. 1587, doi. 10.1093/bioinformatics/btq255

By:

Chunfang Zheng

Publication type:

Article