Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 12

Results: 71

ISMB 2010 Organization.

Published in:: Bioinformatics, 2010, v. 26, n. 12, p. i2, doi. 10.1093/bioinformatics/btq246
Publication type:: Article

TRStalker: an efficient heuristic for finding fuzzy tandem repeats.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i358, doi. 10.1093/bioinformatics/btq209

By:

Pellegrini, Marco;
Renda, M. Elena;
Vecchio, Alessio

Publication type:

Article

Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i168, doi. 10.1093/bioinformatics/btq189

By:

Rendong Yang;
Zhen Su

Publication type:

Article

Modularity and directionality in genetic interaction maps.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i228, doi. 10.1093/bioinformatics/btq197

By:

Jaimovich, Ariel;
Rinott, Ruty;
Schuldiner, Maya;
Margali, Hanah;
Friedman, Nir

Publication type:

Article

Author Index.

Published in:: Bioinformatics, 2010, v. 26, n. 12, p. i407, doi. 10.1093/bioinformatics/btq256
Publication type:: Article

Discovering transcriptional modules by Bayesian data integration.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i158, doi. 10.1093/bioinformatics/btq210

By:

Savage, Richard S.;
Ghahramani, Zoubin;
Griffin, Jim E.;
De la Cruz, Bernard J.;
Wild, David L.

Publication type:

Article

Inference of combinatorial Boolean rules of synergistic gene sets from cancer microarray datasets.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1506, doi. 10.1093/bioinformatics/btq207

By:

Park, Inho;
Lee, Kwang H.;
Lee, Doheon

Publication type:

Article

Multi-population GWA mapping via multi-task regularized regression.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i208, doi. 10.1093/bioinformatics/btq191

By:

Puniyani, Kriti;
Kim, Seyoung;
Xing, Eric P.

Publication type:

Article

Reconstruction of the neuromuscular junction connectome.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i64, doi. 10.1093/bioinformatics/btq179

By:

Srinivasan, Ranga;
Qing Li;
Zhou, Xiaobo;
Ju Lu;
Lichtman, Jeff;
Wong, Stephen T. C.

Publication type:

Article

SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i47, doi. 10.1093/bioinformatics/btq172

By:

Puniyani, Kriti;
Faloutsos, Christos;
Xing, Eric P.

Publication type:

Article

PepC: proteomics software for identifying differentially expressed proteins based on spectral counting.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1574, doi. 10.1093/bioinformatics/btq171

By:

Heinecke, N. L.;
Pratt, B. S.;
Vaisar, T.;
Becker, L.

Publication type:

Article

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i57, doi. 10.1093/bioinformatics/btq219

By:

Saalfeld, Stephan;
Cardona, Albert;
Hartenstein, Volker;
Tomančák, Pavel

Publication type:

Article

ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1572, doi. 10.1093/bioinformatics/btq170

By:

Wilkerson, Matthew D.;
Hayes, D. Neil

Publication type:

Article

Optimal algorithms for haplotype assembly from whole-genome sequence data.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i183, doi. 10.1093/bioinformatics/btq215

By:

He, Dan;
Choi, Arthur;
Pipatsrisawat, Knot;
Darwiche, Adnan;
Eskin, Eleazar

Publication type:

Article

FABIA: factor analysis for bicluster acquisition.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1520, doi. 10.1093/bioinformatics/btq227

By:

Hochreiter, Sepp;
Bodenhofer, Ulrich;
Heusel, Martin;
Mayr, Andreas;
Mitterecker, Andreas;
Kasim, Adetayo;
Khamiakova, Tatsiana;
Van Sanden, Suzy;
Lin, Dan;
Talloen, Willem;
Bijnens, Luc;
Göhlmann, Hinrich W. H.;
Shkedy, Ziv;
Clevert, Djork-Arné

Publication type:

Article

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i124, doi. 10.1093/bioinformatics/btq202

By:

Van Iersel, Leo;
Kelk, Steven;
Rupp, Regula;
Huson, Daniel

Publication type:

Article

Editorial.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i1, doi. 10.1093/bioinformatics/btq238

By:

Singh, Mona;
Bader, Joel S.

Publication type:

Article

Finding metabolic pathways using atom tracking.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1548, doi. 10.1093/bioinformatics/btq223

By:

Heath, Allison P.;
Bennett, George N.;
Kavraki, Lydia E.

Publication type:

Article

Ligand-binding site prediction of proteins based on known fragment–fragment interactions.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1493, doi. 10.1093/bioinformatics/btq232

By:

Kasahara, Kota;
Kinoshita, Kengo;
Takagi, Toshihisa

Publication type:

Article

Supersplat—spliced RNA-seq alignment.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1500, doi. 10.1093/bioinformatics/btq206

By:

Bryant Jr, Douglas W.;
Shen, Rongkun;
Priest, Henry D.;
Wong, Weng-Keen;
Mockler, Todd C.

Publication type:

Article

Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i7, doi. 10.1093/bioinformatics/btq220

By:

Coelho, Luis Pedro;
Peng, Tao;
Murphy, Robert F.

Publication type:

Article

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i246, doi. 10.1093/bioinformatics/btq176

By:

Yamanishi, Yoshihiro;
Kotera, Masaaki;
Kanehisa, Minoru;
Goto, Susumu

Publication type:

Article

TAPIR, a web server for the prediction of plant microRNA targets, including target mimics.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1566, doi. 10.1093/bioinformatics/btq233

By:

Bonnet, Eric;
Ying He;
Billiau, Kenny;
Van De Peer, Yves

Publication type:

Article

LCE: a link-based cluster ensemble method for improved gene expression data analysis.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1513, doi. 10.1093/bioinformatics/btq226

By:

Iam-on, Natthakan;
Boongoen, Tossapon;
Garrett, Simon

Publication type:

Article

Low-homology protein threading.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i294, doi. 10.1093/bioinformatics/btq192

By:

Jian Peng;
Jinbo Xu

Publication type:

Article

Inferring combinatorial association logic networks in multimodal genome-wide screens.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i149, doi. 10.1093/bioinformatics/btq211

By:

De Ridder, Jeroen;
Gerrits, Alice;
Bot, Jan;
De Haan, Gerald;
Reinders, Marcel;
Wessels, Lodewyk

Publication type:

Article

A spectral graph theoretic approach to quantification and calibration of collective morphological differences in cell images.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i29, doi. 10.1093/bioinformatics/btq194

By:

Yu-Shi Lin;
Chung-Chih Lin;
Yuh-Show Tsai;
Tien-Chuan Ku;
Yi-Hung Huang;
Chun-Nan Hsu

Publication type:

Article

Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1528, doi. 10.1093/bioinformatics/btq141

By:

Liebermeister, Wolfram;
Uhlendorf, Jannis;
Klipp, Edda

Publication type:

Article

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i350, doi. 10.1093/bioinformatics/btq216

By:

Hormozdiari, Fereydoun;
Hajirasouliha, Iman;
Dao, Phuong;
Hach, Faraz;
Yorukoglu, Deniz;
Alkan, Can;
Eichler, Evan E.;
Sahinalp, S. Cenk

Publication type:

Article

TEAM: efficient two-locus epistasis tests in human genome-wide association study.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i217, doi. 10.1093/bioinformatics/btq186

By:

Xiang Zhang;
Shunping Huang;
Fei Zou;
Wei Wang

Publication type:

Article

Markov dynamic models for long-timescale protein motion.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i269, doi. 10.1093/bioinformatics/btq177

By:

Chiang, Tsung-Han;
Hsu, David;
Latombe, Jean-Claude

Publication type:

Article

Automated tracking and analysis of centrosomes in early Caenorhabditis elegans embryos.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i13, doi. 10.1093/bioinformatics/btq190

By:

Jaensch, Steffen;
Decker, Markus;
Hyman, Anthony A.;
Myers, Eugene W.

Publication type:

Article

A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i334, doi. 10.1093/bioinformatics/btq175

By:

Chen, Xiaoyu;
Hoffman, Michael M.;
Bilmes, Jeff A.;
Hesselberth, Jay R.;
Noble, William S.

Publication type:

Article

PathText: a text mining integrator for biological pathway visualizations.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i374, doi. 10.1093/bioinformatics/btq221

By:

Kemper, Brian;
Matsuzaki, Takuya;
Matsuoka, Yukiko;
Tsuruoka, Yoshimasa;
Kitano, Hiroaki;
Ananiadou, Sophia;
Tsujii, Jun'ichi

Publication type:

Article

Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic trees.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i140, doi. 10.1093/bioinformatics/btq198

By:

Yufeng Wu

Publication type:

Article

Fragment-free approach to protein folding using conditional neural fields.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i310, doi. 10.1093/bioinformatics/btq193

By:

Feng Zhao;
Jian Peng;
Jinbo Xu

Publication type:

Article

Computing biological functions using BioΨ, a formal description of biological processes based on elementary bricks of actions.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1542, doi. 10.1093/bioinformatics/btq169

By:

Pérès, Sabine;
Felicori, Liza;
Rialle, Stéphanie;
Jobard, Elodie;
Molina, Franck

Publication type:

Article

Robust unmixing of tumor states in array comparative genomic hybridization data.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i106, doi. 10.1093/bioinformatics/btq213

By:

Tolliver, David;
Tsourakakis, Charalampos;
Subramanian, Ayshwarya;
Shackney, Stanley;
Schwartz, Russell

Publication type:

Article

Efficient identification of identical-by-descent status in pedigrees with many untyped individuals.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i191, doi. 10.1093/bioinformatics/btq222

By:

Xin Li;
Xiaolin Yin;
Jing Li

Publication type:

Article

A CoD-based reduction algorithm for designing stationary control policies on Boolean networks.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1556, doi. 10.1093/bioinformatics/btq225

By:

Ghaffari, Noushin;
Ivanov, Ivan;
Qian, Xiaoning;
Dougherty, Edward R.

Publication type:

Article

Deuteration distribution estimation with improved sequence coverage for HX/MS experiments.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1535, doi. 10.1093/bioinformatics/btq165

By:

Lou, Xinghua;
Kirchner, Marc;
Renard, Bernhard Y.;
Köthe, Ullrich;
Boppel, Sebastian;
Graf, Christian;
Lee, Chung-Tien;
Steen, Judith A. J.;
Steen, Hanno;
Mayer, Matthias P.;
Hamprecht, Fred A.

Publication type:

Article

Assessing the functional coherence of gene sets with metrics based on the Gene Ontology graph.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i79, doi. 10.1093/bioinformatics/btq203

By:

Richards, Adam J.;
Muller, Brian;
Shotwell, Matthew;
Cowart, L. Ashley;
Rohrer, Bäerbel;
Xinghua Lu

Publication type:

Article

A statistical method for the detection of variants from next-generation resequencing of DNA pools.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i318, doi. 10.1093/bioinformatics/btq214

By:

Bansal, Vikas

Publication type:

Article

Efficient genome ancestry inference in complex pedigrees with inbreeding.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i199, doi. 10.1093/bioinformatics/btq187

By:

Liu, Eric Yi;
Qi Zhang;
McMillan, Leonard;
De Villena, Fernando Pardo-Manuel;
Wei Wang

Publication type:

Article

Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i38, doi. 10.1093/bioinformatics/btq212

By:

Peng, Hanchuan;
Ruan, Zongcai;
Atasoy, Deniz;
Sternson, Scott

Publication type:

Article

VARiD: A variation detection framework for color-space and letter-space platforms.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i343, doi. 10.1093/bioinformatics/btq184

By:

Dalca, Adrian V.;
Rumble, Stephen M.;
Levy, Samuel;
Brudno, Michael

Publication type:

Article

A soft kinetic data structure for lesion border detection.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i21, doi. 10.1093/bioinformatics/btq178

By:

Kockara, Sinan;
Mete, Mutlu;
Yip, Vincent;
Lee, Brendan;
Aydin, Kemal

Publication type:

Article

HangOut: generating clean PSI-BLAST profiles for domains with long insertions.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1564, doi. 10.1093/bioinformatics/btq208

By:

Kim, Bong-Hyun;
Cong, Qian;
Grishin, Nick V.

Publication type:

Article

Efficient construction of an assembly string graph using the FM-index.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i367, doi. 10.1093/bioinformatics/btq217

By:

Simpson, Jared T.;
Durbin, Richard

Publication type:

Article

Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i255, doi. 10.1093/bioinformatics/btq183

By:

Yizhak, Keren;
Benyamini, Tomer;
Liebermeister, Wolfram;
Ruppin, Eytan;
Shlomi, Tomer

Publication type:

Article