Works matching IS 13674803 AND DT 2010 AND VI 26 AND IP 1

Results: 29

Ancestors 1.0: a web server for ancestral sequence reconstruction.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 130, doi. 10.1093/bioinformatics/btp600

By:

Diallo, Abdoulaye Banire;
Makarenkov, Vladimir;
Blanchette, Mathieu

Publication type:

Article

ARH: predicting splice variants from genome-wide data with modified entropy.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 84, doi. 10.1093/bioinformatics/btp626

By:

Rasche, Axel;
Herwig, Ralf

Publication type:

Article

The gputools package enables GPU computing in R.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 134, doi. 10.1093/bioinformatics/btp608

By:

Buckner, Joshua;
Wilson, Justin;
Seligman, Mark;
Athey, Brian;
Watson, Stanley;
Fan Meng

Publication type:

Article

GATE: software for the analysis and visualization of high-dimensional time series expression data.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 143, doi. 10.1093/bioinformatics/btp628

By:

MacArthur, Ben D.;
Lachmann, Alexander;
Lemischka, Ihor R.;
Ma'ayan, Avi

Publication type:

Article

Methods for combining peptide intensities to estimate relative protein abundance.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 98, doi. 10.1093/bioinformatics/btp610

By:

Carrillo, Brian;
Yanofsky, Corey;
Laboissiere, Sylvie;
Nadon, Robert;
Kearney, Robert E.

Publication type:

Article

Identification of non-Hodgkin's lymphoma prognosis signatures using the CTGDR method.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 15, doi. 10.1093/bioinformatics/btp604

By:

Shuangge Ma;
Yawei Zhang;
Jian Huang;
Xuesong Han;
Holford, Theodore;
Qing Lan;
Rothman, Nathaniel;
Boyle, Peter;
Tongzhang Zheng

Publication type:

Article

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 136, doi. 10.1093/bioinformatics/btp612

By:

Likun Wang;
Zhixing Feng;
Xi Wang;
Xiaowo Wang;
Xuegong Zhang

Publication type:

Article

Simulation-based model selection for dynamical systems in systems and population biology.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 104, doi. 10.1093/bioinformatics/btp619

By:

Toni, Tina;
Stumpf, Michael P. H.

Publication type:

Article

Roll: a new algorithm for the detection of protein pockets and cavities with a rolling probe sphere.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 46, doi. 10.1093/bioinformatics/btp599

By:

Jian Yu;
Yong Zhou;
Isao Tanaka;
Min Yao

Publication type:

Article

MATICCE: mapping transitions in continuous character evolution.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 132, doi. 10.1093/bioinformatics/btp625

By:

Hipp, Andrew L.;
Escudero, Marcial

Publication type:

Article

Reporting bias when using real data sets to analyze classification performance.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 68, doi. 10.1093/bioinformatics/btp605

By:

Yousefi, Mohammadmahdi R.;
Hua, Jianping;
Sima, Chao;
Dougherty, Edward R.

Publication type:

Article

Identification of microRNA activity by Targets' Reverse EXpression.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 91, doi. 10.1093/bioinformatics/btp598

By:

Volinia, Stefano;
Visone, Rosa;
Galasso, Marco;
Rossi, Elda;
Croce, Carlo M.

Publication type:

Article

Computational protein profile similarity screening for quantitative mass spectrometry experiments.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 77, doi. 10.1093/bioinformatics/btp607

By:

Kirchner, Marc;
Renard, Bernhard Y.;
Köthe, Ullrich;
Pappin, Darryl J.;
Hamprecht, Fred A.;
Steen, Hanno;
Steen, Judith A. J.

Publication type:

Article

Annotation confidence score for genome annotation: a genome comparison approach.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 22, doi. 10.1093/bioinformatics/btp613

By:

Youngik Yang;
Gilbert, Donald;
Sun Kim

Publication type:

Article

The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 38, doi. 10.1093/bioinformatics/btp614

By:

Clement, Nathan L.;
Snell, Quinn;
Clement, Mark J.;
Hollenhorst, Peter C.;
Purwar, Jahnvi;
Graves, Barbara J.;
Cairns, Bradley R.;
Johnson, W. Evan

Publication type:

Article

SimBoolNet—a Cytoscape plugin for dynamic simulation of signaling networks.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 141, doi. 10.1093/bioinformatics/btp617

By:

Jie Zheng;
Zhang, David;
Przytycki, Pawel F.;
Zielinski, Rafal;
Capala, Jacek;
Przytycka, Teresa M.

Publication type:

Article

Seed-based IntaRNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 1, doi. 10.1093/bioinformatics/btp609

By:

Richter, Andreas S.;
Schleberger, Christian;
Backofen, Rolf;
Steglich, Claudia

Publication type:

Article

NGSView: an extensible open source editor for next-generation sequencing data.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 125, doi. 10.1093/bioinformatics/btp611

By:

Arner, Erik;
Hayashizaki, Yoshihide;
Daub, Carsten O.

Publication type:

Article

Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 111, doi. 10.1093/bioinformatics/btp602

By:

Yun Niu;
Otasek, David;
Jurisica, Igor

Publication type:

Article

Targeted interrogation of copy number variation using SCIMMkit.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 120, doi. 10.1093/bioinformatics/btp606

By:

Zerr, Troy;
Cooper, Gregory M.;
Eichler, Evan E.;
Nickerson, Deborah A.

Publication type:

Article

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 139, doi. 10.1093/bioinformatics/btp616

By:

Robinson, Mark D.;
McCarthy, Davis J.;
Smyth, Gordon K.

Publication type:

Article

Modeling the interplay of single-stranded binding proteins and nucleic acid secondary structure.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 61, doi. 10.1093/bioinformatics/btp627

By:

Forties, Robert A.;
Bundschuh, Ralf

Publication type:

Article

Predictive rule inference for epistatic interaction detection in genome-wide association studies.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 30, doi. 10.1093/bioinformatics/btp622

By:

Xiang Wan;
Can Yang;
Qiang Yang;
Hong Xue;
Tang, Nelson L. S.;
Weichuan Yu

Publication type:

Article

Accurate confidence aware clustering of array CGH tumor profiles.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 6, doi. 10.1093/bioinformatics/btp603

By:

Van Houte, Bart P. P.;
Heringa, Jaap

Publication type:

Article

Phenopedia and Genopedia: disease-centered and gene-centered views of the evolving knowledge of human genetic associations.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 145, doi. 10.1093/bioinformatics/btp618

By:

Yu, W.;
Clyne, M.;
Khoury, M. J.;
Gwinn, M.

Publication type:

Article

MicroRazerS: rapid alignment of small RNA reads.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 123, doi. 10.1093/bioinformatics/btp601

By:

Emde, Anne-Katrin;
Grunert, Marcel;
Weese, David;
Reinert, Knut;
Sperling, Silke R.

Publication type:

Article

Automatic clustering of docking poses in virtual screening process using self-organizing map.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 53, doi. 10.1093/bioinformatics/btp623

By:

Bouvier, Guillaume;
Evrard-Todeschi, Nathalie;
Girault, Jean-Pierre;
Bertho, Gildas

Publication type:

Article

inGAP: an integrated next-generation genome analysis pipeline.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 127, doi. 10.1093/bioinformatics/btp615

By:

Ji Qi;
Fangqing Zhao;
Buboltz, Anne;
Schuster, Stephan C.

Publication type:

Article

GeneE: Gene and protein query expansion with disambiguation.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 147, doi. 10.1093/bioinformatics/btp597

By:

Schuemie, Martijn J.;
Ning Kang;
Hekkelman, Maarten L.;
Kors, Jan A.

Publication type:

Article