Works matching IS 13674803 AND DT 2009 AND VI 25 AND IP 23

Results: 29

ncRNAppi—a tool for identifying disease-related miRNA and siRNA targeting pathways.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3199, doi. 10.1093/bioinformatics/btp574

By:

Ka-Lok Ng;
Hsueh-Chuan Liu;
Shan-Chih Lee

Publication type:

Article

SimCT: a generic tool to visualize ontology-based relationships for biological objects.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3197, doi. 10.1093/bioinformatics/btp553

By:

Herrmann, Carl;
Bérard, Sèverine;
Tichit, Laurent

Publication type:

Article

MOODS: fast search for position weight matrix matches in DNA sequences.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3181, doi. 10.1093/bioinformatics/btp554

By:

Korhonen, Janne;
Martinmäki, Petri;
Pizzi, Cinzia;
Rastas, Pasi;
Ukkonen, Esko

Publication type:

Article

Automatic assignment of reaction operators to enzymatic reactions.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3135, doi. 10.1093/bioinformatics/btp549

By:

Leber, Markus;
Egelhofer, Volker;
Schomburg, Ida;
Schomburg, Dietmar

Publication type:

Article

In response to ‘Can sugars be produced from fatty acids? A test case for pathway analysis tools’.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3202, doi. 10.1093/bioinformatics/btp557

By:

Faust, Karoline;
Croes, Didier;
Van Helden, Jacques

Publication type:

Article

VDNA: The virtual DNA plug-in for VMD.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3187, doi. 10.1093/bioinformatics/btp566

By:

Bishop, Thomas C.

Publication type:

Article

Computing the shortest elementary flux modes in genome-scale metabolic networks.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3158, doi. 10.1093/bioinformatics/btp564

By:

De Figueiredo, Luis F.;
Podhorski, Adam;
Rubio, Angel;
Kaleta, Christoph;
Beasley, John E.;
Schuster, Stefan;
Planes, Francisco J.

Publication type:

Article

Quantitative measurement of aging using image texture entropy.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3060, doi. 10.1093/bioinformatics/btp571

By:

Shamir, Lior;
Wolkow, Catherine A.;
Goldberg, Ilya G.

Publication type:

Article

Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3121, doi. 10.1093/bioinformatics/btp559

By:

Park, Peter J.;
Sek Won Kong;
Tebaldi, Toma;
Lai, Weil R.;
Kasif, Simon;
Kohane, Isaac S.

Publication type:

Article

Qupe—a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3128, doi. 10.1093/bioinformatics/btp568

By:

Albaum, Stefan P.;
Neuweger, Heiko;
Fränzel, Benjamin;
Lange, Sita;
Mertens, Dominik;
Trötschel, Christian;
Wolters, Dirk;
Kalinowski, Jörn;
Nattkemper, Tim W.;
Goesmann, Alexander

Publication type:

Article

PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3183, doi. 10.1093/bioinformatics/btp545

By:

Oliva, Romina;
Thornton, Janet M.;
Pellegrini-Calace, Marialuisa

Publication type:

Article

Genome analysis with inter-nucleotide distances.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3064, doi. 10.1093/bioinformatics/btp546

By:

Afreixo, Vera;
Bastos, Carlos A. C.;
Pinho, Armando J.;
Garcia, Sara P.;
Ferreira, Paulo J. S. G.

Publication type:

Article

How and when should interactome-derived clusters be used to predict functional modules and protein function?

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3143, doi. 10.1093/bioinformatics/btp551

By:

Song, Jimin;
Singh, Mona

Publication type:

Article

Detection of new protein domains using co-occurrence: application to Plasmodium falciparum.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3077, doi. 10.1093/bioinformatics/btp560

By:

Terrapon, Nicolas;
Gascuel, Olivier;
Maréchal, Éric;
Bréehélin, Laurent

Publication type:

Article

Adaptive multi-agent architecture for functional sequence motifs recognition.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3084, doi. 10.1093/bioinformatics/btp567

By:

Zeng, Jia;
Alhajj, Reda;
Demetrick, Douglas

Publication type:

Article

The interwinding nature of protein–protein interfaces and its implication for protein complex formation.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3108, doi. 10.1093/bioinformatics/btp563

By:

Yura, Kei;
Steven, Hayward

Publication type:

Article

Lost in translation: an assessment and perspective for computational microRNA target identification.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3049, doi. 10.1093/bioinformatics/btp565

By:

Alexiou, Panagiotis;
Maragkakis, Manolis;
Papadopoulos, Giorgos L.;
Reczko, Martin;
Hatzigeorgiou, Artemis G.

Publication type:

Article

Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3151, doi. 10.1093/bioinformatics/btp558

By:

Hojung Nam;
Bong Chul Chung;
Younghoon Kim;
KiYoung Lee;
Doheon Lee

Publication type:

Article

Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3174, doi. 10.1093/bioinformatics/btp548

By:

Agarwal, Shashank;
Hong Yu

Publication type:

Article

Processing and population genetic analysis of multigenic datasets with ProSeq3 software.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3189, doi. 10.1093/bioinformatics/btp572

By:

Filatov, Dmitry A.

Publication type:

Article

Client-side integration of life science literature resources.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3194, doi. 10.1093/bioinformatics/btp550

By:

Easty, Richard;
Nikolov, Nikolay

Publication type:

Article

Identifiability of isoform deconvolution from junction arrays and RNA-Seq.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3056, doi. 10.1093/bioinformatics/btp544

By:

Hiller, David;
Hui Jiang;
Weihong Xu;
Wing Hung Wong

Publication type:

Article

Reproducing the manual annotation of multiple sequence alignments using a SVM classifier.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3093, doi. 10.1093/bioinformatics/btp552

By:

Blouin, Christian;
Perry, Scott;
Lavell, Allan;
Susko, Edward;
Roger, Andrew J.

Publication type:

Article

HHsvm: fast and accurate classification of profile–profile matches identified by HHsearch.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3071, doi. 10.1093/bioinformatics/btp555

By:

Dlakić, Mensur

Publication type:

Article

EasyMIFs and SiteHound: a toolkit for the identification of ligand-binding sites in protein structures.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3185, doi. 10.1093/bioinformatics/btp562

By:

Ghersi, Dario;
Sanchez, Roberto

Publication type:

Article

Functionally guided alignment of protein interaction networks for module detection.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3166, doi. 10.1093/bioinformatics/btp569

By:

Ali, Waqar;
Deane, Charlotte M.

Publication type:

Article

Bayesian detection of non-sinusoidal periodic patterns in circadian expression data.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3114, doi. 10.1093/bioinformatics/btp547

By:

Chudova, Darya;
Ihler, Alexander;
Lin, Kevin K.;
Andersen, Bogi;
Smyth, Padhraic

Publication type:

Article

W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3191, doi. 10.1093/bioinformatics/btp570

By:

Jin, Victor X.;
Apostolos, Jeff;
Nagisetty, Naga Satya Venkateswara Ra;
Farnham, Peggy J.

Publication type:

Article

LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction.

Published in:

Bioinformatics, 2009, v. 25, n. 23, p. 3099, doi. 10.1093/bioinformatics/btp561

By:

Kauffman, Chris;
Karypis, George

Publication type:

Article