Works matching IS 13674803 AND DT 2009 AND VI 25 AND IP 22

Results: 28

PubMed-EX: a web browser extension to enhance PubMed search with text mining features.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3031, doi. 10.1093/bioinformatics/btp475

By:

Richard Tzong-Han Tsai;
Hong-Jie Dai;
Po-Ting Lai;
Chi-Hsin Huang

Publication type:

Article

Phenotypic categorization of genetic skin diseases reveals new relations between phenotypes, genes and pathways.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2891, doi. 10.1093/bioinformatics/btp538

By:

Sadreyev, Ruslan I.;
Feramisco, Jamison D.;
Tsao, Hensin;
Grishin, Nick V.

Publication type:

Article

Characterization of 1H NMR spectroscopic data and the generation of synthetic validation sets.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2992, doi. 10.1093/bioinformatics/btp540

By:

Anderson, Paul E.;
Raymer, Michael L.;
Kelly, Benjamin J.;
Reo, Nicholas V.;
DelRaso, Nicholas J.;
Doom, T. E.

Publication type:

Article

Mobyle: a new full web bioinformatics framework.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3005, doi. 10.1093/bioinformatics/btp493

By:

Néron, Bertrand;
Ménager, Hervé;
Maufrais, Corinne;
Joly, Nicolas;
Maupetit, Julien;
Letort, Sébastien;
Carrere, Sébastien;
Tuffery, Pierre;
Letondal, Catherine

Publication type:

Article

Metabolite and reaction inference based on enzyme specificities.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2975, doi. 10.1093/bioinformatics/btp507

By:

De Groot, M. J. L.;
Van Berlo, R. J. P.;
Van Winden, W. A.;
Verheijen, P. J. T.;
Reinders, M. J. T.;
De Ridder, D.

Publication type:

Article

UniMaP: finding unique mass and peptide signatures in the human proteome.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3035, doi. 10.1093/bioinformatics/btp516

By:

Alexandridou, Anastasia;
Tsangaris, George Th.;
Vougas, Konstantinos;
Nikita, Konstantina;
Spyrou, George

Publication type:

Article

Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2962, doi. 10.1093/bioinformatics/btp494

By:

Kashima, Hisashi;
Yamanishi, Yoshihiro;
Kato, Tsuyoshi;
Sugiyama, Masashi;
Tsuda, Koji

Publication type:

Article

Predicting homologous signaling pathways using machine learning.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2913, doi. 10.1093/bioinformatics/btp532

By:

Bostan, Babak;
Greiner, Russell;
Szafron, Duane;
Lu, Paul

Publication type:

Article

Next generation software for functional trend analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3043, doi. 10.1093/bioinformatics/btp498

By:

Berriz, Gabriel F.;
Beaver, John E.;
Cenik, Can;
Tasan, Murat;
Roth, Frederick P.

Publication type:

Article

Identification of genes involved in the same pathways using a Hidden Markov Model-based approach.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2945, doi. 10.1093/bioinformatics/btp521

By:

Senf, Alexander;
Xue-wen Chen

Publication type:

Article

Flynet: a genomic resource for Drosophila melanogaster transcriptional regulatory networks.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3001, doi. 10.1093/bioinformatics/btp469

By:

Feng Tian;
Shah, Parantu K.;
Xiangjun Liu;
Negre, Nicolas;
Jia Chen;
Karpenko, Oleksiy;
White, Kevin P.;
Grossman, Robert L.

Publication type:

Article

A boosting approach to structure learning of graphs with and without prior knowledge.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2929, doi. 10.1093/bioinformatics/btp485

By:

Anjum, Shahzia;
Doucet, Arnaud;
Holmes, Chris C.

Publication type:

Article

Improving peptide identification with single-stage mass spectrum peaks.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2969, doi. 10.1093/bioinformatics/btp501

By:

Zengyou He;
Weichuan Yu

Publication type:

Article

Comparative analysis and unification of domain–domain interaction networks.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3020, doi. 10.1093/bioinformatics/btp522

By:

Björkholm, Patrik;
Sonnhammer, Erik L. L.

Publication type:

Article

Mining gene functional networks to improve mass-spectrometry-based protein identification.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2955, doi. 10.1093/bioinformatics/btp461

By:

Ramakrishnan, Smriti R.;
Vogel, Christine;
Taejoon Kwon;
Penalva, Luiz O.;
Marcotte, Edward M.;
Miranker, Daniel P.

Publication type:

Article

De novo computational prediction of non-coding RNA genes in prokaryotic genomes.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2897, doi. 10.1093/bioinformatics/btp537

By:

Tran, Thao T.;
Fengfeng Zhou;
Marshburn, Sarah;
Stead, Mark;
Kushner, Sidney R.;
Ying Xu

Publication type:

Article

Identifying related journals through log analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3038, doi. 10.1093/bioinformatics/btp529

By:

Zhiyong Lu;
Xie, Natalie;
Wilbur, W. John

Publication type:

Article

A method for visualizing CellML models.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3012, doi. 10.1093/bioinformatics/btp495

By:

Wimalaratne, S. M.;
Halstead, M. D. B.;
Lloyd, C. M.;
Cooling, M. T.;
Crampin, E. J.;
Nielsen, P. F.

Publication type:

Article

QuickGO: a web-based tool for Gene Ontology searching.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3045, doi. 10.1093/bioinformatics/btp536

By:

Binns, David;
Dimmer, Emily;
Huntley, Rachael;
Barrell, Daniel;
O'Donovan, Claire;
Apweiler, Rolf

Publication type:

Article

Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.

Published in:

2009

By:

Neuwald, Andrew F.

Publication type:

Correction Notice

CMap 1.01: a comparative mapping application for the Internet.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3040, doi. 10.1093/bioinformatics/btp458

By:

Youens-Clark, Ken;
Faga, Ben;
Yap, Immanuel V.;
Stein, Lincoln;
Ware, Doreen

Publication type:

Article

Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2937, doi. 10.1093/bioinformatics/btp511

By:

Äijö, Tarmo;
Lähdesmäki, Harri

Publication type:

Article

Saint: a lightweight integration environment for model annotation.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3026, doi. 10.1093/bioinformatics/btp523

By:

Lister, Allyson L.;
Pocock, Matthew;
Taschuk, Morgan;
Wipat, Anil

Publication type:

Article

Understanding hydrogen-bond patterns in proteins using network motifs.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2921, doi. 10.1093/bioinformatics/btp541

By:

Rahat, Ofer;
Alon, Uri;
Levy, Yaakov;
Schreiber, Gideon

Publication type:

Article

A dictionary to identify small molecules and drugs in free text.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2983, doi. 10.1093/bioinformatics/btp535

By:

Hettne, Kristina M.;
Stierum, Rob H.;
Schuemie, Martijn J.;
Hendriksen, Peter J. M.;
Schijvenaars, Bob J. A.;
Mulligen, Erik M. van;
Kleinjans, Jos;
Kors, Jan A.

Publication type:

Article

CellClassifier: supervised learning of cellular phenotypes.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3028, doi. 10.1093/bioinformatics/btp524

By:

Rämö, Pauli;
Sacher, Raphael;
Snijder, Berend;
Begemann, Boris;
Pelkmans, Lucas

Publication type:

Article

digeR: a graphical user interface R package for analyzing 2D-DIGE data.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 3033, doi. 10.1093/bioinformatics/btp514

By:

Fan, Yue;
Murphy, T. Brendan;
Watson, R. William G.

Publication type:

Article

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2906, doi. 10.1093/bioinformatics/btp543

By:

Shen, Ronglai;
Olshen, Adam B.;
Ladanyi, Marc

Publication type:

Article