Works matching IS 13674803 AND DT 2009 AND VI 25 AND IP 21

Results: 29

De novo transcriptome assembly with ABySS.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2872, doi. 10.1093/bioinformatics/btp367

By:

Birol, Inanç;
Jackman, Shaun D.;
Nielsen, Cydney B.;
Qian, Jenny Q.;
Varhol, Richard;
Stazyk, Greg;
Morin, Ryan D.;
Zhao, Yongjun;
Hirst, Martin;
Schein, Jacqueline E.;
Horsman, Doug E.;
Connors, Joseph M.;
Gascoyne, Randy D.;
Marra, Marco A.;
Jones, Steven J. M.

Publication type:

Article

Analyzing biological network parameters with CentiScaPe.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2857, doi. 10.1093/bioinformatics/btp517

By:

Scardoni, Giovanni;
Petterlini, Michele;
Laudanna, Carlo

Publication type:

Article

The effects of probe binding affinity differences on gene expression measurements and how to deal with them.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2772, doi. 10.1093/bioinformatics/btp492

By:

Dannemann, Michael;
Lorenc, Anna;
Hellmann, Ines;
Khaitovich, Philipp;
Lachmann, Michael

Publication type:

Article

Correlating multiple SNPs and multiple disease phenotypes: penalized non-linear canonical correlation analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2764, doi. 10.1093/bioinformatics/btp491

By:

Waaijenborg, Sandra;
Zwinderman, Aeilko H.

Publication type:

Article

TagDust—a program to eliminate artifacts from next generation sequencing data.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2839, doi. 10.1093/bioinformatics/btp527

By:

Lassmann, Timo;
Hayashizaki, Yoshihide;
Daub, Carsten O.

Publication type:

Article

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2865, doi. 10.1093/bioinformatics/btp394

By:

Kai Ye;
Schulz, Marcel H.;
Long, Quan;
Apweiler, Rolf;
Ning, Zemin

Publication type:

Article

A novel algorithm for detecting differentially regulated paths based on gene set enrichment analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2787, doi. 10.1093/bioinformatics/btp510

By:

Keller, Andreas;
Backes, Christina;
Gerasch, Andreas;
Kaufmann, Michael;
Kohlbacher, Oliver;
Meese, Eckart;
Lenhof, Hans-Peter

Publication type:

Article

A hypergraph-based learning algorithm for classifying gene expression and arrayCGH data with prior knowledge.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2831, doi. 10.1093/bioinformatics/btp467

By:

Ze Tian;
Tae Hyun Hwang;
Rui Kuang

Publication type:

Article

Quantifying cancer progression with conjunctive Bayesian networks.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2809, doi. 10.1093/bioinformatics/btp505

By:

Gerstung, Moritz;
Baudis, Michael;
Moch, Holger;
Beerenwinkel, Niko

Publication type:

Article

Bi-correlation clustering algorithm for determining a set of co-regulated genes.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2795, doi. 10.1093/bioinformatics/btp526

By:

Bhattacharya, Anindya;
De, Rajat K.

Publication type:

Article

integrOmics: an R package to unravel relationships between two omics datasets.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2855, doi. 10.1093/bioinformatics/btp515

By:

Kim-Anh Lê Cao;
González, Ignacio;
Déjean, Sébastien

Publication type:

Article

ERNEST: a toolbox for chemical reaction network theory.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2853, doi. 10.1093/bioinformatics/btp513

By:

Soranzo, Nicola;
Altafini, Claudio

Publication type:

Article

Statistical methods for gene set co-expression analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2780, doi. 10.1093/bioinformatics/btp502

By:

Youn Jeong Choi;
Kendziorski, Christina

Publication type:

Article

WEbcoli: an interactive and asynchronous web application for in silico design and analysis of genome-scale E.coli model.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2850, doi. 10.1093/bioinformatics/btp496

By:

Tae-Sung Jung;
Hock Chuan Yeo;
Reddy, Satty G.;
Wan-Sup Cho;
Dong-Yup Lee

Publication type:

Article

Updates to the RMAP short-read mapping software.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2841, doi. 10.1093/bioinformatics/btp533

By:

Smith, Andrew D.;
Wen-Yu Chung;
Hodges, Emily;
Kendall, Jude;
Hannon, Greg;
Hicks, James;
Zhenyu Xuan;
Zhang, Michael Q.

Publication type:

Article

Algorithms for optimal protein structure alignment.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2751, doi. 10.1093/bioinformatics/btp530

By:

Poleksic, Aleksandar

Publication type:

Article

Accessible methods for the dynamic time-scale decomposition of biochemical systems.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2816, doi. 10.1093/bioinformatics/btp451

By:

Surovtsova, Irina;
Simus, Natalia;
Lorenz, Thomas;
König, Artjom;
Sahle, Sven;
Kummer, Ursula

Publication type:

Article

Multiple testing in genome-wide association studies via hidden Markov models.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2802, doi. 10.1093/bioinformatics/btp476

By:

Zhi Wei;
Wenguang Sun;
Kai Wang;
Hakonarson, Hakon

Publication type:

Article

COMPASS: a program for generating serial samples under an infinite sites model.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2845, doi. 10.1093/bioinformatics/btp534

By:

Jakobsson, Mattias

Publication type:

Article

Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2878, doi. 10.1093/bioinformatics/btp377

By:

Dutilh, Bas E.;
Huynen, Martijn A.;
Strous, Marc

Publication type:

Article

Modified variational Bayes EM estimation of hidden Markov tree model of cell lineages.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2824, doi. 10.1093/bioinformatics/btp456

By:

Olariu, Victor;
Coca, Daniel;
Billings, Stephen A.;
Tonge, Peter;
Gokhale, Paul;
Andrews, Peter W.;
Kadirkamanathan, Visakan

Publication type:

Article

Automated inference of molecular mechanisms of disease from amino acid substitutions.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2744, doi. 10.1093/bioinformatics/btp528

By:

Biao Li;
Krishnan, Vidhya G.;
Mort, Matthew E.;
Fuxiao Xin;
Kamati, Kishore K.;
Cooper, David N.;
Mooney, Sean D.;
Radivojac, Predrag

Publication type:

Article

PathBuilder—open source software for annotating and developing pathway resources.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2860, doi. 10.1093/bioinformatics/btp453

By:

Kandasamy, Kumaran;
Keerthikumar, Shivakumar;
Raju, Rajesh;
Prasad, T. S. Keshava;
Ramachandra, Y. L.;
Mohan, Sujatha;
Pandey, Akhilesh

Publication type:

Article

CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2757, doi. 10.1093/bioinformatics/btp539

By:

Bartoli, Lisa;
Fariselli, Piero;
Krogh, Anders;
Casadio, Rita

Publication type:

Article

Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2735, doi. 10.1093/bioinformatics/btp531

By:

Kayano, Mitsunori;
Takigawa, Ichigaku;
Shiga, Motoki;
Tsuda, Koji;
Mamitsuka, Hiroshi

Publication type:

Article

iBioSim: a tool for the analysis and design of genetic circuits.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2848, doi. 10.1093/bioinformatics/btp457

By:

Myers, Chris J.;
Barker, Nathan;
Jones, Kevin;
Kuwahara, Hiroyuki;
Madsen, Curtis;
Nguyen, Nam-Phuong D.

Publication type:

Article

A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG).

Published in:

2009

By:

Brudno, Michael;
Medvedev, Paul;
Stoye, Jens;
De La Vega, Francisco M.

Publication type:

Conference Paper/Materials

ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2882, doi. 10.1093/bioinformatics/btp378

By:

Quon, Gerald;
Morris, Quaid

Publication type:

Article

3D-SURFER: software for high-throughput protein surface comparison and analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2843, doi. 10.1093/bioinformatics/btp542

By:

La, David;
Esquivel-Rodríguez, Juan;
Venkatraman, Vishwesh;
Bin Li;
Sael, Lee;
Ueng, Stephen;
Ahrendt, Steven;
Kihara, Daisuke

Publication type:

Article