Works matching IS 13674803 AND DT 2009 AND VI 25 AND IP 20

Results: 34

Response to comment on ‘MeSH-up: effective MeSH text classification for improved document retrieval’.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2772, doi. 10.1093/bioinformatics/btp484

By:

Trieschnigg, Dolf;
Pezik, Piotr;
Lee, Vivian;
De Jong, Franciska;
Kraaij, Wessel;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

Enhancement of beta-sheet assembly by cooperative hydrogen bonds potential.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2639, doi. 10.1093/bioinformatics/btp449

By:

Levy-Moonshine, Ami;
Amir, El-ad David;
Keasar, Chen

Publication type:

Article

PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2743, doi. 10.1093/bioinformatics/btp512

By:

Aleksiev, T.;
Potestio, R.;
Pontiggia, F.;
Cozzini, S.;
Micheletti, C.

Publication type:

Article

The SNP ratio test: pathway analysis of genome-wide association datasets.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2762, doi. 10.1093/bioinformatics/btp448

By:

O'Dushlaine, Colm;
Kenny, Elaine;
Heron, Elizabeth A.;
Segurado, Ricardo;
Gill, Michael;
Morris, Derek W.;
Corvin, Aiden

Publication type:

Article

Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2739, doi. 10.1093/bioinformatics/btp519

By:

Sand, Olivier;
Thomas-Chollier, Morgane;
Van Helden, Jacques

Publication type:

Article

A modified LOESS normalization applied to microRNA arrays: a comparative evaluation.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2685, doi. 10.1093/bioinformatics/btp443

By:

Risso, Davide;
Massa, Maria Sofia;
Chiogna, Monica;
Romualdi, Chiara

Publication type:

Article

Methods for labeling error detection in microarrays based on the effect of data perturbation on the regression model.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2708, doi. 10.1093/bioinformatics/btp478

By:

Chen Zhang;
Chunguo Wu;
Blanzieri, Enrico;
You Zhou;
Yan Wang;
Wei Du;
Yanchun Liang

Publication type:

Article

Expertomica metabolite profiling: getting more information from LC-MS using the stochastic systems approach.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2764, doi. 10.1093/bioinformatics/btp427

By:

Urban, Jan;
Vanĕk, Jan;
Soukup, Jiřri;
Štys, Dalibor

Publication type:

Article

Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2677, doi. 10.1093/bioinformatics/btp442

By:

Kinoshita, Kengo;
Obayashi, Takeshi

Publication type:

Article

ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2737, doi. 10.1093/bioinformatics/btp508

By:

Kristiansson, Erik;
Hugenholtz, Philip;
Dalevi, Daniel

Publication type:

Article

info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2715, doi. 10.1093/bioinformatics/btp490

By:

Defrance, Matthieu;
Van Helden, Jacques

Publication type:

Article

SnoopCGH: software for visualizing comparative genomic hybridization data.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2732, doi. 10.1093/bioinformatics/btp488

By:

Almagro-Garcia, Jacob;
Manske, Magnus;
Carret, Celine;
Campino, Susana;
Auburn, Sarah;
MacInnis, Bronwyn L.;
Maslen, Gareth;
Pain, Arnab;
Newbold, Christopher I.;
Kwiatkowski, Dominic P.;
Clark, Taane G.

Publication type:

Article

Statistical lower bounds on protein copy number from fluorescence expression images.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2670, doi. 10.1093/bioinformatics/btp415

By:

Zamparo, Lee;
Perkins, Theodore J.

Publication type:

Article

T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2632, doi. 10.1093/bioinformatics/btp482

By:

Jorda, Julien;
Kajava, Andrey V.

Publication type:

Article

Gene ranking and biomarker discovery under correlation.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2700, doi. 10.1093/bioinformatics/btp460

By:

Zuber, Verena;
Strimmer, Korbinian

Publication type:

Article

GRIMP: a web- and grid-based tool for high-speed analysis of large-scale genome-wide association using imputed data.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2750, doi. 10.1093/bioinformatics/btp497

By:

Estrada, Karol;
Abuseiris, Anis;
Grosveld, Frank G.;
Uitterlinden, Andre G.;
Knoch, Tobias A.;
Rivadeneira, Fernando

Publication type:

Article

FRED—a framework for T-cell epitope detection.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2758, doi. 10.1093/bioinformatics/btp409

By:

Feldhahn, Magdalena;
Donnes, Pierre;
Thiel, Philipp;
Kohlbacher, Oliver

Publication type:

Article

Comment on ‘MeSH-up: effective MeSH text classification for improved document retrieval’.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2770, doi. 10.1093/bioinformatics/btp483

By:

Névéol, Aurelie;
Mork, James G.;
Aronson, Alan R.

Publication type:

Article

Moderated effect size and P-value combinations for microarray meta-analyses.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2692, doi. 10.1093/bioinformatics/btp444

By:

Marot, Guillemette;
Foulley, Jean-Louis;
Mayer, Claus-Dieter;
Jaffrézic, Florence

Publication type:

Article

YADA: a tool for taking the most out of high-resolution spectra.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2734, doi. 10.1093/bioinformatics/btp489

By:

Carvalho, Paulo C.;
Xu, Tao;
Han, Xuemei;
Cociorva, Daniel;
Barbosa, Valmir C.;
Yates III, John R.

Publication type:

Article

A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2655, doi. 10.1093/bioinformatics/btp500

By:

Qiwen Dong;
Shuigeng Zhou;
Jihong Guan

Publication type:

Article

FBA-SimVis: interactive visualization of constraint-based metabolic models.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2755, doi. 10.1093/bioinformatics/btp408

By:

Grafahrend-Belau, Eva;
Klukas, Christian;
Junker, Björn H.;
Schreiber, Falk

Publication type:

Article

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2730, doi. 10.1093/bioinformatics/btp472

By:

Nicol, John W.;
Helt, Gregg A.;
Blanchard Jr., Steven G.;
Raja, Archana;
Loraine, Ann E.

Publication type:

Article

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2625, doi. 10.1093/bioinformatics/btp503

By:

Bandyopadhyay, Sanghamitra;
Mitra, Ramkrishna

Publication type:

Article

Corrigendum for Elliott,B. et al., ‘PathCase pathways database system’, Bioinformatics, Nov. 2008, 24(21), pp. 2526–2533.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2773, doi. 10.1093/bioinformatics/btp520

By:

Elliott, Brendan;
Kirac, Mustafa;
Cakmak, Ali;
Yavas, Gokhan;
Mayes, Stephen;
Cheng, En;
Wang, Yuan;
Gupta, Chirag;
Ozsoyoglu, Gultekin;
Ozsoyoglu, Zehra Meral

Publication type:

Article

Partition function and base pairing probabilities for RNA–RNA interaction prediction.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2646, doi. 10.1093/bioinformatics/btp481

By:

Huang, Fenix W. D.;
Qin, Jing;
Reidys, Christian M.;
Stadler, Peter F.

Publication type:

Article

An optimization model for metabolic pathways.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2723, doi. 10.1093/bioinformatics/btp441

By:

Planes, F. J.;
Beasley, J. E.

Publication type:

Article

Caleydo: connecting pathways and gene expression.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2760, doi. 10.1093/bioinformatics/btp432

By:

Streit, Marc;
Lex, Alexander;
Kalkusch, Michael;
Zatloukal, Kurt;
Schmalstieg, Dieter

Publication type:

Article

ANCHOR: web server for predicting protein binding regions in disordered proteins.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2745, doi. 10.1093/bioinformatics/btp518

By:

Dosztáanyi, Zsuzsanna;
Mészáros, Bálint;
Simon, István

Publication type:

Article

A System for Information Management in BioMedical Studies—SIMBioMS.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2768, doi. 10.1093/bioinformatics/btp420

By:

Krestyaninova, Maria;
Zarins, Andris;
Viksna, Juris;
Kurbatova, Natalja;
Rucevskis, Peteris;
Neogi, Sudeshna Guha;
Gostev, Mike;
Perheentupa, Teemu;
Knuuttila, Juha;
Barrett, Amy;
Lappalainen, Ilkka;
Rung, Johan;
Podnieks, Karlis;
Sarkans, Ugis;
McCarthy, Mark I.;
Brazma, Alvis

Publication type:

Article

PopABC: a program to infer historical demographic parameters.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2747, doi. 10.1093/bioinformatics/btp487

By:

Lopes, Joao S.;
Balding, David;
Beaumont, Mark A.

Publication type:

Article

CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2753, doi. 10.1093/bioinformatics/btp499

By:

Maenhout, Steven;
De Baets, Bernard;
Haesaert, Geert

Publication type:

Article

massXpert 2: a cross-platform software environment for polymer chemistry modelling and simulation/analysis of mass spectrometric data.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2741, doi. 10.1093/bioinformatics/btp504

By:

Rusconi, Filippo

Publication type:

Article

MISTRAL: a tool for energy-based multiple structural alignment of proteins.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2663, doi. 10.1093/bioinformatics/btp506

By:

Micheletti, Cristian;
Orland, Henri

Publication type:

Article