Works matching IS 13674803 AND DT 2009 AND VI 25 AND IP 18

Results: 31

Affy exon tissues: exon levels in normal tissues in human, mouse and rat.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2442, doi. 10.1093/bioinformatics/btp414

By:

Pohl, Andrew A.;
Sugnet, Charles W.;
Clark, Tyson A.;
Smith, Kayla;
Fujita, Pauline A.;
Cline, Melissa S.

Publication type:

Article

Supervised prediction of drug–target interactions using bipartite local models.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2397, doi. 10.1093/bioinformatics/btp433

By:

Bleakley, Kevin;
Yamanishi, Yoshihiro

Publication type:

Article

Genome-wide maps of mono- and di-nucleosomes of Aspergillus fumigatus.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2295, doi. 10.1093/bioinformatics/btp413

By:

Nishida, Hiromi;
Motoyama, Takayuki;
Yamamoto, Shogo;
Aburatani, Hiroyuki;
Osada, Hiroyuki

Publication type:

Article

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2404, doi. 10.1093/bioinformatics/btp397

By:

Huttenhower, Curtis;
Hibbs, Matthew A.;
Myers, Chad L.;
Caudy, Amy A.;
Hess, David C.;
Troyanskaya, Olga G.

Publication type:

Article

TreeTime: an extensible C++ software package for Bayesian phylogeny reconstruction with time-calibration.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2440, doi. 10.1093/bioinformatics/btp417

By:

Himmelmann, Lin;
Metzler, Dirk

Publication type:

Article

Evidence for human microRNA-offset RNAs in small RNA sequencing data.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2298, doi. 10.1093/bioinformatics/btp419

By:

Langenberger, David;
Bermudez-Santana, Clara;
Hertel, Jana;
Hoffmann, Steve;
Khaitovich, Philipp;
Stadler, Peter F.

Publication type:

Article

ITM Probe: analyzing information flow in protein networks.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2447, doi. 10.1093/bioinformatics/btp398

By:

Stojmirović, Aleksandar;
Yi-Kuo Yu

Publication type:

Article

Cross-scale, cross-pathway evaluation using an agent-based non-small cell lung cancer model.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2389, doi. 10.1093/bioinformatics/btp416

By:

Zhihui Wang;
Birch, Christina M.;
Sagotsky, Jonathan;
Deisboeck, Thomas S.

Publication type:

Article

DYNAMIK: a software environment for cell DYNAmics, Motility, and Information tracKing, with an application to Ras pathways.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2383, doi. 10.1093/bioinformatics/btp405

By:

Jaeger, Stefan;
Qingfeng Song;
Su-Shing Chen

Publication type:

Article

Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2309, doi. 10.1093/bioinformatics/btp423

By:

Zhen Xia;
Gulei Jin;
Jun Zhu;
Ruhong Zhou

Publication type:

Article

High-throughput minor histocompatibility antigen prediction.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2411, doi. 10.1093/bioinformatics/btp404

By:

DeLuca, David S.;
Eiz-Vesper, Britta;
Ladas, Nektarios;
Khattab, Barbara Anna-Maria;
Blasczyk, Rainer

Publication type:

Article

SNP-o-matic.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2434, doi. 10.1093/bioinformatics/btp403

By:

Manske, Heinrich Magnus;
Kwiatkowski, Dominic P.

Publication type:

Article

ADAN: a database for prediction of protein–protein interaction of modular domains mediated by linear motifs.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2418, doi. 10.1093/bioinformatics/btp424

By:

Encinar, J. A.;
Fernandez-Ballester, G.;
Sánchez, I. E.;
Hurtado-Gomez, E.;
Stricher, F.;
Beltrao, P.;
Serrano, L.

Publication type:

Article

TTA Lynx: a web-based service for analysis of actinomycete genes containing rare TTA codon.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2432, doi. 10.1093/bioinformatics/btp402

By:

Zaburannyy, Nestor;
Ostash, Bohdan;
Fedorenko, Victor

Publication type:

Article

TileProbe: modeling tiling array probe effects using publicly available data.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2369, doi. 10.1093/bioinformatics/btp425

By:

Judy, Jennifer Toolan;
Hongkai Ji

Publication type:

Article

Robustness considerations in selecting efficient two-color microarray designs.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2355, doi. 10.1093/bioinformatics/btp407

By:

Latif, A. H. M. Mahbub;
Bretz, Frank;
Brunner, Edgar

Publication type:

Article

Motif discovery and motif finding from genome-mapped DNase footprint data.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2318, doi. 10.1093/bioinformatics/btp434

By:

Kulakovskiy, Ivan V.;
Favorov, Alexander V.;
Makeev, Vsevolod J.

Publication type:

Article

PIQA: pipeline for Illumina G1 genome analyzer data quality assessment.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2438, doi. 10.1093/bioinformatics/btp429

By:

Martínez-Alcántara, A.;
Ballesteros, E.;
Feng, C.;
Rojas, M.;
Koshinsky, H.;
Fofanov, V. Y.;
Havlak, P.;
Fofanov, Y.

Publication type:

Article

Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2362, doi. 10.1093/bioinformatics/btp411

By:

Xiaofeng Dai;
Yli-Harja, Olli;
Ribeiro, Andre S.

Publication type:

Article

k-link EST clustering: evaluating error introduced by chimeric sequences under different degrees of linkage.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2302, doi. 10.1093/bioinformatics/btp410

By:

Bragg, Lauren M.;
Stone, Glenn

Publication type:

Article

HI: haplotype improver using paired-end short reads.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2436, doi. 10.1093/bioinformatics/btp412

By:

Quan Long;
MacArthur, Daniel;
Zemin Ning;
Tyler-Smith, Chris

Publication type:

Article

Transcriptional landscape estimation from tiling array data using a model of signal shift and drift.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2341, doi. 10.1093/bioinformatics/btp395

By:

Nicolas, Pierre;
Leduc, Aurélie;
Robin, Stéphane;
Rasmussen, Simon;
Jarmer, Hanne;
Bessières, Philippe

Publication type:

Article

WebArrayDB: cross-platform microarray data analysis and public data repository.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2425, doi. 10.1093/bioinformatics/btp430

By:

Xiao-Qin Xia;
McClelland, Michael;
Porwollik, Steffen;
Wenzhi Song;
Xianling Cong;
Yipeng Wang

Publication type:

Article

Path: a tool to facilitate pathway-based genetic association analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2444, doi. 10.1093/bioinformatics/btp431

By:

Zamar, David;
Tripp, Ben;
Ellis, George;
Daley, Denise

Publication type:

Article

HAPLOWSER: a whole-genome haplotype browser for personal genome and metagenome.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2430, doi. 10.1093/bioinformatics/btp399

By:

Jong Hyun Kim;
Woo-Cheol Kim;
Waterman, Michael S.;
Li, Lei M.;
Park, Sanghyun

Publication type:

Article

Prediction of protein β-residue contacts by Markov logic networks with grounding-specific weights.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2326, doi. 10.1093/bioinformatics/btp421

By:

Lippi, Marco;
Frasconi, Paolo

Publication type:

Article

Antimony: a modular model definition language.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2452, doi. 10.1093/bioinformatics/btp401

By:

Smith, Lucian P.;
Bergmann, Frank T.;
Chandran, Deepak;
Sauro, Herbert M.

Publication type:

Article

ViTraM: visualization of transcriptional modules.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2450, doi. 10.1093/bioinformatics/btp400

By:

Sun, Hong;
Lemmens, Karen;
Bulcke, Tim Van den;
Engelen, Kristof;
De Moor, Bart;
Marchal, Kathleen

Publication type:

Article

Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2348, doi. 10.1093/bioinformatics/btp406

By:

Glazko, Galina V.;
Emmert-Streib, Frank

Publication type:

Article

Comparative study on ChIP-seq data: normalization and binding pattern characterization.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2334, doi. 10.1093/bioinformatics/btp384

By:

Taslim, Cenny;
Jiejun Wu;
Yan, Pearlly;
Singer, Greg;
Parvin, Jeffrey;
Tim Huang;
Shili Lin;
Kun Huang

Publication type:

Article

Identification of distant family relationships.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2376, doi. 10.1093/bioinformatics/btp418

By:

Skare, Øivind;
Sheehan, Nuala;
Egeland, Thore

Publication type:

Article