Works matching IS 13674803 AND DT 2009 AND VI 25 AND IP 15

Results: 33

GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1978, doi. 10.1093/bioinformatics/btp279

By:

Lasse Folkersen;
Diego Diez;
Craig E. Wheelock;
Jesper Z. Haeggström;
Susumu Goto;
Per Eriksson;
Anders Gabrielsen

Publication type:

Article

TANDEM: integrating automated allele binning into genetics and genomics workflows.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1982, doi. 10.1093/bioinformatics/btp303

By:

Michael Matschiner;
Walter Salzburger

Publication type:

Article

Treevolution: visual analysis of phylogenetic trees.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1970, doi. 10.1093/bioinformatics/btp333

By:

Rodrigo Santamaría;
Roberto Therón

Publication type:

Article

Ulla: a program for calculating environment-specific amino acid substitution tables.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1976, doi. 10.1093/bioinformatics/btp300

By:

Semin Lee;
Tom L. Blundell

Publication type:

Article

CycSim--an online tool for exploring and experimenting with genome-scale metabolic models.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1987, doi. 10.1093/bioinformatics/btp268

By:

F. Le Fèvre;
S. Smidtas;
C. Combe;
M. Durot;
Florence dAlché-Buc;
V. Schachter

Publication type:

Article

apLCMS--adaptive processing of high-resolution LC/MS data.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1930, doi. 10.1093/bioinformatics/btp291

By:

Tianwei Yu;
Youngja Park;
Jennifer M. Johnson;
Dean P. Jones

Publication type:

Article

Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1923, doi. 10.1093/bioinformatics/btp358

By:

A. Raue;
C. Kreutz;
T. Maiwald;
J. Bachmann;
M. Schilling;
U. Klingmüller;
J. Timmer

Publication type:

Article

Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1905, doi. 10.1093/bioinformatics/btp325

By:

Wandaliz Torres-García;
Weiwen Zhang;
George C. Runger;
Roger H. Johnson;
Deirdre R. Meldrum

Publication type:

Article

RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1959, doi. 10.1093/bioinformatics/btp307

By:

Oscar M. Rueda;
Ramon Diaz-Uriarte

Publication type:

Article

A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1980, doi. 10.1093/bioinformatics/btp301

By:

Véronique Dupierris;
Christophe Masselon;
Magali Court;
Sylvie Kieffer-Jaquinod;
Christophe Bruley

Publication type:

Article

Generating linkage mapping files from Affymetrix SNP chip data.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1961, doi. 10.1093/bioinformatics/btp313

By:

M. Bahlo;
C. J. Bromhead

Publication type:

Article

SOAP2: an improved ultrafast tool for short read alignment.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1966

By:

Ruiqiang Li;
Chang Yu;
Yingrui Li;
Tak-Wah Lam;
Siu-Ming Yiu;
Karsten Kristiansen;
Jun Wang

Publication type:

Article

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1972, doi. 10.1093/bioinformatics/btp348

By:

Salvador Capella-Gutiérrez;
José M. Silla-Martínez;
Toni Gabaldón

Publication type:

Article

InterMap3D: predicting and visualizing co-evolving protein residues.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1963, doi. 10.1093/bioinformatics/btp335

By:

Rodrigo Gouveia-Oliveira;
Francisco S. Roque;
Rasmus Wernersson;
Thomas Sicheritz-Ponten;
Peter W. Sackett;
Anne Mølgaard;
Anders G. Pedersen

Publication type:

Article

ABACAS: algorithm-based automatic contiguation of assembled sequences.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1968, doi. 10.1093/bioinformatics/btp347

By:

Samuel Assefa;
Thomas M. Keane;
Thomas D. Otto;
Chris Newbold;
Matthew Berriman

Publication type:

Article

DIANA-mirPath: Integrating human and mouse microRNAs in pathways.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1991, doi. 10.1093/bioinformatics/btp299

By:

G. L. Papadopoulos;
P. Alexiou;
M. Maragkakis;
M. Reczko;
A. G. Hatzigeorgiou

Publication type:

Article

MetNetAligner: a web service tool for metabolic network alignments.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1989, doi. 10.1093/bioinformatics/btp287

By:

Qiong Cheng;
Robert Harrison;
Alexander Zelikovsky

Publication type:

Article

U-Compare: share and compare text mining tools with UIMA.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1997, doi. 10.1093/bioinformatics/btp289

By:

Yoshinobu Kano;
William A. Baumgartner;
Luke McCrohon;
Sophia Ananiadou;
K. Bretonnel Cohen;
Lawrence Hunter;
Junichi Tsujii

Publication type:

Article

VARNA: Interactive drawing and editing of the RNA secondary structure.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1974, doi. 10.1093/bioinformatics/btp250

By:

Kévin Darty;
Alain Denise;
Yann Ponty

Publication type:

Article

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1952, doi. 10.1093/bioinformatics/btp340

By:

Chongzhi Zang;
Dustin E. Schones;
Chen Zeng;
Kairong Cui;
Keji Zhao;
Weiqun Peng

Publication type:

Article

jClust: a clustering and visualization toolbox.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1994

By:

Georgios A. Pavlopoulos;
Charalampos N. Moschopoulos;
Sean D. Hooper;
Reinhard Schneider;
Sophia Kossida

Publication type:

Article

Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: an application to OB-fold domains.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1876, doi. 10.1093/bioinformatics/btp339

By:

Andrea Zen;
Cesira de Chiara;
Annalisa Pastore;
Cristian Micheletti

Publication type:

Article

Hub genes with positive feedbacks function as master switches in developmental gene regulatory networks.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1898, doi. 10.1093/bioinformatics/btp316

By:

Chang H. Seo;
Jeong-Rae Kim;
Man-Sun Kim;
Kwang-Hyun Cho

Publication type:

Article

Using chemical organization theory for model checking.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1915, doi. 10.1093/bioinformatics/btp332

By:

Christoph Kaleta;
Stephan Richter;
Peter Dittrich

Publication type:

Article

Highly accelerated feature detection in proteomics data sets using modern graphics processing units.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1937, doi. 10.1093/bioinformatics/btp294

By:

Rene Hussong;
Barbara Gregorius;
Andreas Tholey;
Andreas Hildebrandt

Publication type:

Article

CATMAID: collaborative annotation toolkit for massive amounts of image data.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1984, doi. 10.1093/bioinformatics/btp266

By:

Stephan Saalfeld;
Albert Cardona;
Volker Hartenstein;
Pavel Tomancák

Publication type:

Article

Enhancing MEDLINE document clustering by incorporating MeSH semantic similarity.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1944, doi. 10.1093/bioinformatics/btp338

By:

Shanfeng Zhu;
Jia Zeng;
Hiroshi Mamitsuka

Publication type:

Article

Complex discovery from weighted PPI networks.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1891, doi. 10.1093/bioinformatics/btp311

By:

Guimei Liu;
Limsoon Wong;
Hon Nian Chua

Publication type:

Article

UTGB toolkit for personalized genome browsers.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1856, doi. 10.1093/bioinformatics/btp350

By:

Taro L. Saito;
Jun Yoshimura;
Shin Sasaki;
Budrul Ahsan;
Atsushi Sasaki;
Reginaldo Kuroshu;
Shinichi Morishita

Publication type:

Article

CORAL: aligning conserved core regions across domain families.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1862, doi. 10.1093/bioinformatics/btp334

By:

Jessica H. Fong;
Aron Marchler-Bauer

Publication type:

Article

Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.

Published in:: Bioinformatics, 2009, v. 25, n. 15, p. 1869, doi. 10.1093/bioinformatics/btp342
Publication type:: Article

Predictor correlation impacts machine learning algorithms: implications for genomic studies.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1884, doi. 10.1093/bioinformatics/btp331

By:

Kristin K. Nicodemus;
James D. Malley

Publication type:

Article

Visual and statistical comparison of metagenomes.

Published in:

Bioinformatics, 2009, v. 25, n. 15, p. 1849, doi. 10.1093/bioinformatics/btp341

By:

Suparna Mitra;
Bernhard Klar;
Daniel H. Huson

Publication type:

Article