Works matching IS 13674803 AND DT 2009 AND VI 25 AND IP 11

Results: 36

KiPar, a tool for systematic information retrieval regarding parameters for kinetic modelling of yeast metabolic pathways.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1404, doi. 10.1093/bioinformatics/btp175

By:

Irena Spasic;
Evangelos Simeonidis;
Hanan L. Messiha;
Norman W. Paton;
Douglas B. Kell

Publication type:

Article

Hooke: an open software platform for force spectroscopy.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1428, doi. 10.1093/bioinformatics/btp180

By:

Massimo Sandal;
Fabrizio Benedetti;
Marco Brucale;
Alberto Gomez-Casado;
Bruno Samorì

Publication type:

Article

Integrating shotgun proteomics and mRNA expression data to improve protein identification.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1397, doi. 10.1093/bioinformatics/btp168

By:

Smriti R. Ramakrishnan;
Christine Vogel;
John T. Prince;
Zhihua Li;
Luiz O. Penalva;
Margaret Myers;
Edward M. Marcotte;
Daniel P. Miranker;
Rong Wang

Publication type:

Article

PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1435, doi. 10.1093/bioinformatics/btp252

By:

Yanga Byun;
Kyungsook Han

Publication type:

Article

CNVVdb: a database of copy number variations across vertebrate genomes.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1419, doi. 10.1093/bioinformatics/btp166

By:

Feng-Chi Chen;
Yen-Zho Chen;
Trees-Juen Chuang

Publication type:

Article

Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1422, doi. 10.1093/bioinformatics/btp163

By:

Peter J. A. Cock;
Tiago Antao;
Jeffrey T. Chang;
Brad A. Chapman;
Cymon J. Cox;
Andrew Dalke;
Iddo Friedberg;
Thomas Hamelryck;
Frank Kauff;
Bartek Wilczynski;
Michiel J. L. de Hoon

Publication type:

Article

ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1424, doi. 10.1093/bioinformatics/btp178

By:

You Jung Kim;
Nikhil Teletia;
Victor Ruotti;
Christopher A. Maher;
Arul M. Chinnaiyan;
Ron Stewart;
James A. Thomson;
Jignesh M. Patel

Publication type:

Article

Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1426, doi. 10.1093/bioinformatics/btp160

By:

R. Matthew Ward;
Eric Venner;
Bryce Daines;
Stephen Murray;
Serkan Erdin;
David M. Kristensen;
Olivier Lichtarge

Publication type:

Article

MICAlign: a sequence-to-structure alignment tool integrating multiple sources of information in conditional random fields.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1433, doi. 10.1093/bioinformatics/btp251

By:

Xuefeng Xia;
Song Zhang;
Yu Su;
Zhirong Sun

Publication type:

Article

MeSH Up: effective MeSH text classification for improved document retrieval.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1412, doi. 10.1093/bioinformatics/btp249

By:

Dolf Trieschnigg;
Piotr Pezik;
Vivian Lee;
Franciska de Jong;
Wessel Kraaij;
Dietrich Rebholz-Schuhmann

Publication type:

Article

LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1431, doi. 10.1093/bioinformatics/btp242

By:

Michael Ryan;
Mark Diekhans;
Stephanie Lien;
Yun Liu;
Rachel Karchin

Publication type:

Article

Accurate identification of orthologous segments among multiple genomes.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1474, doi. 10.1093/bioinformatics/btp263

By:

Tsuyoshi Hachiya;
Yasunori Osana;
Kris Popendorf;
Yasubumi Sakakibara

Publication type:

Article

ViaComplex: software for landscape analysis of gene expression networks in genomic context.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1468, doi. 10.1093/bioinformatics/btp246

By:

Mauro A. A. Castro;
José L. Rybarczyk Filho;
Rodrigo J. S. Dalmolin;
Marialva Sinigaglia;
José C. F. Moreira;
José C. M. Mombach;
Rita M. C. de Almeida

Publication type:

Article

pySolo: a complete suite for sleep analysis in Drosophila.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1466, doi. 10.1093/bioinformatics/btp237

By:

Giorgio F. Gilestro;
Chiara Cirelli

Publication type:

Article

StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1472, doi. 10.1093/bioinformatics/btp181

By:

Bas van Breukelen;
Henk W. P. van den Toorn;
Madalina M. Drugan;
Albert J. R. Heck

Publication type:

Article

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1470, doi. 10.1093/bioinformatics/btp167

By:

Jitao David Zhang;
Stefan Wiemann

Publication type:

Article

Globally optimal stitching of tiled 3D microscopic image acquisitions.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1463, doi. 10.1093/bioinformatics/btp184

By:

Stephan Preibisch;
Stephan Saalfeld;
Pavel Tomancak

Publication type:

Article

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1451, doi. 10.1093/bioinformatics/btp187

By:

P. Librado;
J. Rozas

Publication type:

Article

Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1447, doi. 10.1093/bioinformatics/btp169

By:

Vincent J. Carey;
Adam R. Davis;
Michael F. Lawrence;
Robert Gentleman;
Benjamin A. Raby

Publication type:

Article

BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1438, doi. 10.1093/bioinformatics/btp165

By:

Paul Geeleher;
Dermot Morris;
John P. Hinde;
Aaron Golden

Publication type:

Article

FDR made easy in differential feature discovery and correlation analyses.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1461, doi. 10.1093/bioinformatics/btp176

By:

Xuefeng Bruce Ling;
Harvey Cohen;
Joseph Jin;
Irwin Lau;
James Schilling

Publication type:

Article

IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1449, doi. 10.1093/bioinformatics/btp183

By:

Miao-Xin Li;
Lin Jiang;
Patrick Yu-Ping Kao;
Pak-C. Sham;
You-Qiang Song

Publication type:

Article

GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models.

Published in:: Bioinformatics, 2009, v. 25, n. 11, p. 1453, doi. 10.1093/bioinformatics/btp162
Publication type:: Article

Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1445, doi. 10.1093/bioinformatics/btp159

By:

John Watkinson;
Dimitris Anastassiou

Publication type:

Article

SimMLST: simulation of multi-locus sequence typing data under a neutral model.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1442, doi. 10.1093/bioinformatics/btp145

By:

Xavier Didelot;
Daniel Lawson;
Daniel Falush

Publication type:

Article

A novel parallel approach to the likelihood-based estimation of admixture in population genetics.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1440, doi. 10.1093/bioinformatics/btp136

By:

Ambra Giovannini;
Gaetano Zanghirati;
Mark A. Beaumont;
Lounès Chikhi;
Guido Barbujani

Publication type:

Article

GetBonNie for building, analyzing and sharing rule-based models.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1457

By:

Bin Hu;
G. Matthew Fricke;
James R. Faeder;
Richard G. Posner;
William S. Hlavacek

Publication type:

Article

SBML2LATEX: Conversion of SBML files into human-readable reports.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1455, doi. 10.1093/bioinformatics/btp170

By:

Andreas Dräger;
Hannes Planatscher;
Dieudonné Motsou Wouamba;
Adrian Schröder;
Michael Hucka;
Lukas Endler;
Martin Golebiewski;
Wolfgang Müller;
Andreas Zell

Publication type:

Article

Reduced amino acid alphabets exhibit an improved sensitivity and selectivity in fold assignment.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1356, doi. 10.1093/bioinformatics/btp164

By:

Eric L. Peterson;
Jané Kondev;
Julie A. Theriot;
Rob Phillips

Publication type:

Article

Network-based multiple locus linkage analysis of expression traits.

Published in:: Bioinformatics, 2009, v. 25, n. 11, p. 1390, doi. 10.1093/bioinformatics/btp177
Publication type:: Article

CloudBurst: highly sensitive read mapping with MapReduce.

Published in:: Bioinformatics, 2009, v. 25, n. 11, p. 1363, doi. 10.1093/bioinformatics/btp236
Publication type:: Article

Many-core algorithms for statistical phylogenetics.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1370, doi. 10.1093/bioinformatics/btp244

By:

Marc A. Suchard;
Andrew Rambaut

Publication type:

Article

Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1349, doi. 10.1093/bioinformatics/btp241

By:

Triinu Koressaar;
Kai Jõers;
Maido Remm

Publication type:

Article

In silico analysis of promoter regions from cold-induced genes in rice (Oryza sativa L.) and Arabidopsis thaliana reveals the importance of combinatorial control.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1345

By:

Angelica Lindlöf;
Marcus Bräutigam;
Aakash Chawade;
Olof Olsson;
Björn Olsson

Publication type:

Article

Variable slope normalization of reverse phase protein arrays.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1384, doi. 10.1093/bioinformatics/btp174

By:

E. Shannon Neeley;
Steven M. Kornblau;
Kevin R. Coombes;
Keith A. Baggerly

Publication type:

Article

A web application to perform linkage disequilibrium and linkage analyses on a computational grid.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1377, doi. 10.1093/bioinformatics/btp171

By:

Jules Hernández-Sánchez;
Jean-Alain Grunchec;
Sara Knott

Publication type:

Article