Works matching IS 13674803 AND DT 2009 AND VI 25 AND IP 1

Results: 32

Prediction of translation initiation site for microbial genomes with TriTISA.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 123, doi. 10.1093/bioinformatics/btn576

By:

Gang-Qing Hu;
Xiaobin Zheng;
Huai-Qiu Zhu;
Zhen-Su She

Publication type:

Article

TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 126, doi. 10.1093/bioinformatics/btn575

By:

Milne, Lain;
Lindner, Dominik;
Bayer, Micha;
Husmeier, Dirk;
McGuire, Gráinne;
Marshall, David F.;
Wright, Frank

Publication type:

Article

Integrating and annotating the interactome using the MiMI plugin for cytoscape.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 137, doi. 10.1093/bioinformatics/btn501

By:

Gao, Jing;
Ade, Alex S.;
Tarcea, V. Glenn;
Weymouth, Terry E.;
Mirel, Barbara R.;
Jagadish, H. V.;
States, David J.

Publication type:

Article

Discovery of phosphorylation motif mixtures in phosphoproteomics data.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 14, doi. 10.1093/bioinformatics/btn569

By:

Ritz, Anna;
Shakhnarovich, Gregory;
Salomon, Arthur R.;
Raphael, Benjamin J.

Publication type:

Article

How frugal is mother nature with haplotypes?

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 68, doi. 10.1093/bioinformatics/btn572

By:

Climer, Sharlee;
Jäger, Gerold;
Templeton, Alan R.;
Zhang, Weixiong

Publication type:

Article

Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 36, doi. 10.1093/bioinformatics/btn570

By:

Furusawa, Chikara;
Ono, Naoaki;
Suzuki, Shingo;
Agata, Tomoharu;
Shimizu, Hiroshi;
Yomo, Tetsuya

Publication type:

Article

Power enhancement via multivariate outlier testing with gene expression arrays.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 48, doi. 10.1093/bioinformatics/btn591

By:

Asare, Adam L.;
Gao, Zhong;
Carey, Vincent J.;
Wang, Richard;
Seyfert-Margolis, Vicki

Publication type:

Article

Slider—maximum use of probability information for alignment of short sequence reads and SNP detection.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 6, doi. 10.1093/bioinformatics/btn565

By:

Malhis, Nawar;
Butterfield, Yaron S. N.;
Ester, Martin;
Jones, Steven J. M.

Publication type:

Article

Rankprop: a web server for protein remote homology detection.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 121, doi. 10.1093/bioinformatics/btn567

By:

Melvin, Iain;
Weston, Jason;
Leslie, Christina;
Noble, William Stafford

Publication type:

Article

Can sugars be produced from fatty acids? A test case for pathway analysis tools.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 152, doi. 10.1093/bioinformatics/btn621

By:

De Figueiredo, Luis F.;
Schuster, Stefan;
Kaleta, Christoph;
Fell, David A.

Publication type:

Article

CRONOS: the cross-reference navigation server.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 141, doi. 10.1093/bioinformatics/btn590

By:

Waegele, Brigitte;
Dunger-Kaltenbach, Irmtraud;
Fobo, Gisela;
Montrone, Corinna;
Mewes, H.-Werner;
Ruepp, Andreas

Publication type:

Article

Decomposition of complex microbial behaviors into resource-based stress responses.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 90, doi. 10.1093/bioinformatics/btn589

By:

Carlson, Ross P.

Publication type:

Article

Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 30, doi. 10.1093/bioinformatics/btn583

By:

Jiansheng Wu;
Hongde Liu;
Xueye Duan;
Yan Ding;
Hongtao Wu;
Yunfei Bai;
Xiao Sun

Publication type:

Article

A novel signaling pathway impact analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 75, doi. 10.1093/bioinformatics/btn577

By:

Tarca, Adi Laurentiu;
Draghici, Sorin;
Khatri, Purvesh;
Hassan, Sonia S.;
Mittal, Pooja;
Kim, Jung-sun;
Kim, Chong Jai;
Kusanovic, Juan Pedro;
Romero, Roberto

Publication type:

Article

Predicting DNA recognition by Cys2His2 zinc finger proteins.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 22, doi. 10.1093/bioinformatics/btn580

By:

Persikov, Anton V.;
Osada, Robert;
Singh, Mona

Publication type:

Article

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 130, doi. 10.1093/bioinformatics/btn604

By:

Addo-Quaye, Charles;
Miller, Webb;
Axtell, Michael J.

Publication type:

Article

The wisdom of the commons: ensemble tree classifiers for prostate cancer prognosis.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 54, doi. 10.1093/bioinformatics/btn354

By:

Koziol, James A.;
Feng, Anne C.;
Jia, Zhenyu;
Wang, Yipeng;
Goodison, Seven;
McClelland, Michael;
Mercola, Dan

Publication type:

Article

Genetic algorithms for simultaneous variable and sample selection in metabonomics.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 112, doi. 10.1093/bioinformatics/btn586

By:

Cavill, Rachel;
Keun, Hector C.;
Holmes, Elaine;
Lindon, John C.;
Nicholson, Jeremy K.;
Ebbels, Timothy M. D.

Publication type:

Article

Genetic association analysis with FAMHAP: a major program update.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 134, doi. 10.1093/bioinformatics/btn581

By:

Herold, Christine;
Becker, Tim

Publication type:

Article

Comment on ‘A congruence index for testing topological similarity between trees’.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 147, doi. 10.1093/bioinformatics/btn539

By:

Kupczok, Anne;
Von Haeseler, Arndt

Publication type:

Article

Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 128, doi. 10.1093/bioinformatics/btn573

By:

Golfier, G.;
Lemoine, S.;
Miltenberg, A. van;
Bendjoudi, A.;
Rossier, J.;
Crom, S. Le;
Potier, M.-C.

Publication type:

Article

Combining multiple positive training sets to generate confidence scores for protein–protein interactions.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 105, doi. 10.1093/bioinformatics/btn597

By:

Yu, Jingkai;
Finley Jr, Russell L.

Publication type:

Article

MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 139, doi. 10.1093/bioinformatics/btn588

By:

Brouwer, Rutger W. W.;
Hijum, Sacha A. F. T. van;
Kuipers, Oscar P.

Publication type:

Article

DNAPlotter: circular and linear interactive genome visualization.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 119, doi. 10.1093/bioinformatics/btn578

By:

Carver, Tim;
Thomson, Nick;
Bleasby, Alan;
Berriman, Matthew;
Parkhill, Julian

Publication type:

Article

KEPE—a motif frequently superimposed on sumoylation sites in metazoan chromatin proteins and transcription factors.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 1, doi. 10.1093/bioinformatics/btn594

By:

Diella, Francesca;
Chabanis, Sophie;
Luck, Katja;
Chica, Claudia;
Ramu, Chenna;
Nerlov, Claus;
Gibson, Toby J.

Publication type:

Article

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 83, doi. 10.1093/bioinformatics/btn579

By:

Zhang, Hao;
Lundegaard, Claus;
Nielsen, Morten

Publication type:

Article

Conditional random pattern algorithm for LOH inference and segmentation.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 61, doi. 10.1093/bioinformatics/btn561

By:

Ling-Yun Wu;
Xiaobo Zhou;
Fuhai Li;
Xiaorong Yang;
Chung-Che Chang;
Wong, Stephen T. C.

Publication type:

Article

A multivariate test of association.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 132, doi. 10.1093/bioinformatics/btn563

By:

Ferreira, Manuel A. R.;
Purcell, Shaun M.

Publication type:

Article

In response to comment on ‘A congruence index for testing topological similarity between trees’.

Published in:

2009

By:

De Vienne, Damien M.;
Giraud, Tatiana;
Martin, Olivier C.

Publication type:

Letter

ISMB 2008 conference report.

Published in:

2009

By:

Sansom, Clare

Publication type:

Conference Paper/Materials

Shortest path analysis using partial correlations for classifying gene functions from gene expression data.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 42, doi. 10.1093/bioinformatics/btn574

By:

Fitch, A. Marie;
Jones, M. Beatrix

Publication type:

Article

Align human interactome with phenome to identify causative genes and networks underlying disease families.

Published in:

Bioinformatics, 2009, v. 25, n. 1, p. 98, doi. 10.1093/bioinformatics/btn593

By:

Xuebing Wu;
Qifang Liu;
Rui Jiang

Publication type:

Article