Works matching IS 13674803 AND DT 2008 AND VI 24 AND IP 23

Results: 32

The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2803, doi. 10.1093/bioinformatics/btn524

By:

Geoffrey L. Winsor;
Bhavjinder Khaira;
Thea Van Rossum;
Raymond Lo;
Matthew D. Whiteside;
Fiona S. L. Brinkman

Publication type:

Article

GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2798, doi. 10.1093/bioinformatics/btn520

By:

Yuelin Zhu;
Sean Davis;
Robert Stephens;
Paul S. Meltzer;
Yidong Chen

Publication type:

Article

mspire: mass spectrometry proteomics in Ruby.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2796, doi. 10.1093/bioinformatics/btn513

By:

John T. Prince;
Edward M. Marcotte

Publication type:

Article

IPEP: an in silico tool to examine proteolytic peptides for mass spectrometry.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2801

By:

Dihui Lu;
Richard Z. Liu;
Victoria Izumi;
David Fenstermacher;
Eric B. Haura;
John Koomen;
Steven A. Eschrich

Publication type:

Article

Systems-level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2740, doi. 10.1093/bioinformatics/btn515

By:

Gang Liu;
Dhananjay D. Marathe;
Khushi L. Matta;
Sriram Neelamegham

Publication type:

Article

Impact of dimeric organization of enzyme on its function: the case of photosynthetic water splitting.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2755, doi. 10.1093/bioinformatics/btn530

By:

Jiri Jablonsky;
Petr Susila;
Dusan Lazar

Publication type:

Article

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2776, doi. 10.1093/bioinformatics/btn512

By:

Brian D. Ondov;
Anjana Varadarajan;
Karla D. Passalacqua;
Nicholas H. Bergman

Publication type:

Article

The Protein Feature Ontology: a tool for the unification of protein feature annotations.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2767, doi. 10.1093/bioinformatics/btn528

By:

Gabrielle A. Reeves;
Karen Eilbeck;
Michele Magrane;
Claire ODonovan;
Luisa Montecchi-Palazzi;
Midori A. Harris;
Sandra Orchard;
Rafael C. Jimenez;
Andreas Prlic;
Tim J. P. Hubbard;
Henning Hermjakob;
Janet M. Thornton

Publication type:

Article

Stochastic dynamics of genetic networks: modelling and parameter identification.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2748, doi. 10.1093/bioinformatics/btn527

By:

Eugenio Cinquemani;
Andreas Milias-Argeitis;
Sean Summers;
John Lygeros

Publication type:

Article

Searching protein structure databases with DaliLite v.3.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2780, doi. 10.1093/bioinformatics/btn507

By:

L. Holm;
S. Kääriäinen;
P. Rosenström;
A. Schenkel

Publication type:

Article

A bioinformatics analysis of the cell line nomenclature.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2760, doi. 10.1093/bioinformatics/btn502

By:

Sirarat Sarntivijai;
Alexander S. Ade;
Brian D. Athey;
David J. States

Publication type:

Article

CNVDetector: locating copy number variations using array CGH data.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2773, doi. 10.1093/bioinformatics/btn517

By:

Peng-An Chen;
Hsiao-Fei Liu;
Kun-Mao Chao

Publication type:

Article

POPE--a tool to aid high-throughput phylogenetic analysis.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2778

By:

Thorhildur Juliusdottir;
Fredrik Pettersson;
Richard R. Copley

Publication type:

Article

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2713, doi. 10.1093/bioinformatics/btn514

By:

Jean-Marie Cornuet;
Filipe Santos;
Mark A. Beaumont;
Christian P. Robert;
Jean-Michel Marin;
David J. Balding;
Thomas Guillemaud;
Arnaud Estoup

Publication type:

Article

Protease substrate site predictors derived from machine learning on multilevel substrate phage display data.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2691, doi. 10.1093/bioinformatics/btn538

By:

Ching-Tai Chen;
Ei-Wen Yang;
Hung-Ju Hsu;
Yi-Kun Sun;
Wen-Lian Hsu;
An-Suei Yang

Publication type:

Article

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2672, doi. 10.1093/bioinformatics/btn529

By:

Tim Carver;
Matthew Berriman;
Adrian Tivey;
Chinmay Patel;
Ulrike Böhme;
Barclay G. Barrell;
Julian Parkhill;
Marie-Adèle Rajandream

Publication type:

Article

Smarter clustering methods for SNP genotype calling.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2665, doi. 10.1093/bioinformatics/btn509

By:

Yan Lin;
George C. Tseng;
Soo Yeon Cheong;
Lora J. H. Bean;
Stephanie L. Sherman;
Eleanor Feingold

Publication type:

Article

Improving 2D-DIGE protein expression analysis by two-stage linear mixed models: assessing experimental effects in a melanoma cell study.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2706, doi. 10.1093/bioinformatics/btn508

By:

Elmer A. Ferná;ndez;
María R. Girotti;
Juan A. López del Olmo;
Andrea S. Llera;
Osvaldo L. Podhajcer;
Rodolfo J. C. Cantet;
Mónica Balzarini

Publication type:

Article

Position-dependent motif characterization using non-negative matrix factorization.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2684, doi. 10.1093/bioinformatics/btn526

By:

Lucie N. Hutchins;
Sean M. Murphy;
Priyam Singh;
Joel H. Graber

Publication type:

Article

A better block partition and ligation strategy for individual haplotyping.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2720, doi. 10.1093/bioinformatics/btn519

By:

Yuzhong Zhao;
Yun Xu;
Zhihao Wang;
Hong Zhang;
Guoliang Chen

Publication type:

Article

MSX-3D: a tool to validate 3D protein models using mass spectrometry.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2782, doi. 10.1093/bioinformatics/btn510

By:

Michaël Heymann;
David Paramelle;
Gilles Subra;
Eric Forest;
Jean Martinez;
Christophe Geourjon;
Gilbert Deléage

Publication type:

Article

Identifying differentially expressed subnetworks with MMG.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2792, doi. 10.1093/bioinformatics/btn499

By:

Josselin Noirel;
Guido Sanguinetti;
Phillip C. Wright

Publication type:

Article

QGene 4.0, an extensible Java QTL-analysis platform.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2788, doi. 10.1093/bioinformatics/btn523

By:

Roby Joehanes;
James C. Nelson

Publication type:

Article

A flexible forward simulator for populations subject to selection and demography.

Published in:: Bioinformatics, 2008, v. 24, n. 23, p. 2786, doi. 10.1093/bioinformatics/btn522
Publication type:: Article

WAVECLOCK: wavelet analysis of circadian oscillation.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2794, doi. 10.1093/bioinformatics/btn521

By:

Tom S. Price;
Julie E. Baggs;
Anne M. Curtis;
Garret A. FitzGerald;
John B. Hogenesch

Publication type:

Article

FABSIM: a software for generating FST distributions with various ascertainment biases.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2790

By:

Anna Ramírez-Soriano;
Francesc Calafell

Publication type:

Article

GSEA-SNP: applying gene set enrichment analysis to SNP data from genome-wide association studies.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2784, doi. 10.1093/bioinformatics/btn516

By:

Marit Holden;
Shiwei Deng;
Leszek Wojnowski;
Bettina Kulle

Publication type:

Article

Addendum. Cytoprophet: a Cytoscape plug-in for protein and domain interaction networks inference.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2805, doi. 10.1093/bioinformatics/btn532

By:

Faruck Morcos;
Charles Lamanna;
Marcin Sikora;
Jesús Izaguirre

Publication type:

Article

A novel method for comparing topological models of protein structures enhanced with ligand information.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2698, doi. 10.1093/bioinformatics/btn518

By:

Mallika Veeramalai;
David Gilbert

Publication type:

Article

Specific alignment of structured RNA: stochastic grammars and sequence annealing.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2677, doi. 10.1093/bioinformatics/btn495

By:

Robert K. Bradley;
Lior Pachter;
Ian Holmes

Publication type:

Article

Optimal stepwise experimental design for pairwise functional interaction studies.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2733, doi. 10.1093/bioinformatics/btn472

By:

Fergal P. Casey;
Gerard Cagney;
Nevan J. Krogan;
Denis C. Shields

Publication type:

Article

MeltDB: a software platform for the analysis and integration of metabolomics experiment data.

Published in:

Bioinformatics, 2008, v. 24, n. 23, p. 2726, doi. 10.1093/bioinformatics/btn452

By:

Heiko Neuweger;
Stefan P. Albaum;
Michael Dondrup;
Marcus Persicke;
Tony Watt;
Karsten Niehaus;
Jens Stoye;
Alexander Goesmann

Publication type:

Article